Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HWV03_RS01325 Genome accession   NZ_CP056120
Coordinates   283375..284262 (-) Length   295 a.a.
NCBI ID   WP_211678152.1    Uniprot ID   -
Organism   Moritella sp. 36     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 278375..289262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWV03_RS01305 (HWV03_01305) secA 279288..282005 (+) 2718 WP_211678150.1 preprotein translocase subunit SecA -
  HWV03_RS01310 (HWV03_01310) mutT 282125..282517 (+) 393 WP_211679944.1 8-oxo-dGTP diphosphatase MutT -
  HWV03_RS01315 (HWV03_01315) yacG 282540..282731 (-) 192 WP_211675603.1 DNA gyrase inhibitor YacG -
  HWV03_RS01320 (HWV03_01320) coaE 282758..283363 (-) 606 WP_211678151.1 dephospho-CoA kinase -
  HWV03_RS01325 (HWV03_01325) pilD 283375..284262 (-) 888 WP_211678152.1 A24 family peptidase Machinery gene
  HWV03_RS01330 (HWV03_01330) pilC 284382..285632 (-) 1251 WP_211678153.1 type II secretion system F family protein Machinery gene
  HWV03_RS01335 (HWV03_01335) pilB 285718..287421 (-) 1704 WP_211678154.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HWV03_RS22680 (HWV03_01340) - 287431..287865 (-) 435 WP_211678155.1 pilin -
  HWV03_RS01345 (HWV03_01345) nadC 288255..289097 (-) 843 WP_211673739.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33136.39 Da        Isoelectric Point: 5.2479

>NTDB_id=458209 HWV03_RS01325 WP_211678152.1 283375..284262(-) (pilD) [Moritella sp. 36]
MQDLALLFQLYPWLLWLFATLLGLLVGSFLNVVIYRLPIMMEREWKQECTVYFDEECKTAKSEPEATKFNLLLPRSACPK
CDHQITALENIPVISWLVLRGKCSSCANPISARYPSIELLTGLLSFVVALYIPYGIQLAGALLLTWCLVALTFIDIDKML
LPDQMTLPLLWLGLLLNVNYAWVSPSDAIIGAIVGYLSLWTVYWGFKLLTGKEGMGYGDFKLLAAFGAWFGWQSILAIVL
LSSFAGAIIGISQILLKKHTQGNPIPFGPYLAIAGWLYLIWGDQLVDFYLSNFIY

Nucleotide


Download         Length: 888 bp        

>NTDB_id=458209 HWV03_RS01325 WP_211678152.1 283375..284262(-) (pilD) [Moritella sp. 36]
ATGCAAGACTTAGCGCTTCTCTTTCAACTCTATCCTTGGCTATTATGGTTATTCGCTACCTTACTTGGCCTACTCGTTGG
TAGTTTCTTAAATGTGGTCATTTACCGTTTACCTATCATGATGGAGCGTGAATGGAAGCAAGAGTGCACAGTTTACTTTG
ATGAAGAATGCAAGACCGCAAAGTCAGAACCAGAAGCAACTAAATTCAATTTATTATTACCCCGCTCCGCTTGTCCTAAA
TGCGATCATCAAATAACCGCATTAGAAAACATTCCCGTGATCAGCTGGTTAGTATTACGCGGAAAGTGCAGTAGTTGTGC
AAACCCAATTTCAGCACGTTACCCTAGTATTGAGCTACTAACCGGTTTGTTATCGTTCGTCGTGGCCTTGTACATTCCCT
ACGGTATCCAATTAGCGGGGGCATTATTACTGACTTGGTGTTTAGTTGCGCTGACTTTTATCGATATCGATAAAATGTTA
CTACCCGACCAAATGACATTACCCTTGTTATGGTTAGGCTTACTGCTCAACGTCAACTACGCTTGGGTCTCCCCTTCAGA
TGCGATTATCGGTGCTATCGTTGGTTATCTATCTCTCTGGACTGTGTATTGGGGTTTTAAATTACTGACCGGTAAAGAAG
GTATGGGTTATGGTGACTTCAAACTATTAGCCGCGTTTGGCGCATGGTTCGGCTGGCAGTCGATTTTAGCGATTGTATTA
CTCTCGTCATTTGCTGGCGCTATCATAGGTATTAGTCAAATCCTATTGAAAAAGCATACCCAAGGTAACCCCATTCCATT
TGGTCCTTATCTGGCGATTGCAGGTTGGCTGTATCTTATTTGGGGTGATCAACTCGTTGATTTCTATCTATCCAATTTTA
TTTATTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(143-251)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

57.439

97.966

0.563
  pilD Vibrio campbellii strain DS40M4

55.709

97.966

0.546
  pilD Acinetobacter baumannii D1279779

53.082

98.983

0.525
  pilD Acinetobacter nosocomialis M2

53.082

98.983

0.525
  pilD Neisseria gonorrhoeae MS11

47.761

90.847

0.434