Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   HUW50_RS07775 Genome accession   NZ_CP055263
Coordinates   1620788..1621135 (-) Length   115 a.a.
NCBI ID   WP_066328728.1    Uniprot ID   A0A179T275
Organism   Metabacillus sp. KUDC1714     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1615788..1626135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW50_RS07760 (HUW50_07760) - 1617088..1618869 (-) 1782 WP_066328734.1 solute:sodium symporter family transporter -
  HUW50_RS07765 (HUW50_07765) - 1618890..1619561 (-) 672 WP_066328732.1 DUF4867 family protein -
  HUW50_RS07770 (HUW50_07770) - 1619620..1620300 (-) 681 WP_066328730.1 transaldolase family protein -
  HUW50_RS07775 (HUW50_07775) ssbB 1620788..1621135 (-) 348 WP_066328728.1 single-stranded DNA-binding protein Machinery gene
  HUW50_RS07780 (HUW50_07780) - 1621309..1621728 (-) 420 WP_066328725.1 hypothetical protein -
  HUW50_RS07785 (HUW50_07785) - 1621980..1622390 (+) 411 WP_066328722.1 helix-turn-helix transcriptional regulator -
  HUW50_RS07790 (HUW50_07790) - 1622482..1622922 (+) 441 WP_066328718.1 YwpF family protein -
  HUW50_RS07795 (HUW50_07795) cotJC 1623013..1623582 (-) 570 WP_066328704.1 spore coat protein CotJC -
  HUW50_RS07800 (HUW50_07800) - 1623645..1623905 (-) 261 WP_066328700.1 spore coat protein CotJB -
  HUW50_RS07805 (HUW50_07805) - 1623911..1624156 (-) 246 WP_066328939.1 spore coat associated protein CotJA -
  HUW50_RS07810 (HUW50_07810) - 1624722..1625015 (-) 294 WP_066328697.1 hypothetical protein -
  HUW50_RS07815 (HUW50_07815) fabZ 1625196..1625636 (-) 441 WP_066328692.1 3-hydroxyacyl-ACP dehydratase FabZ -
  HUW50_RS07820 (HUW50_07820) - 1625763..1626050 (-) 288 WP_066328681.1 DNA-directed RNA polymerase subunit beta -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12885.53 Da        Isoelectric Point: 8.4857

>NTDB_id=457294 HUW50_RS07775 WP_066328728.1 1620788..1621135(-) (ssbB) [Metabacillus sp. KUDC1714]
MINQVILVGRLTKDPEIRYTADGAPVANITLAVSRQFRNAAGEIDTDFVNCSVWRRTAENTANYCRKGSIVGVTGRIQTR
SYENAERTRVYVTEVVADSVRFMSGKPRELVEQES

Nucleotide


Download         Length: 348 bp        

>NTDB_id=457294 HUW50_RS07775 WP_066328728.1 1620788..1621135(-) (ssbB) [Metabacillus sp. KUDC1714]
GTGATCAACCAAGTCATATTAGTAGGCAGACTGACGAAAGACCCGGAAATTCGCTATACAGCAGATGGAGCTCCAGTTGC
AAACATCACCCTTGCTGTAAGTCGACAATTTCGCAATGCTGCTGGAGAAATTGATACAGATTTCGTGAATTGCTCTGTTT
GGAGACGAACAGCAGAAAATACAGCAAATTACTGTCGAAAAGGTTCAATTGTAGGCGTAACAGGAAGAATTCAGACGAGA
AGCTATGAAAATGCAGAACGAACTCGAGTTTATGTTACTGAAGTTGTTGCTGATTCCGTTCGCTTTATGAGTGGAAAACC
ACGTGAACTAGTTGAACAAGAAAGTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A179T275

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

71.56

94.783

0.678
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.321

92.174

0.565
  ssb Latilactobacillus sakei subsp. sakei 23K

54.867

98.261

0.539
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.519

93.913

0.409
  ssbA Streptococcus mutans UA159

40.741

93.913

0.383
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.815

93.913

0.374
  ssbB/cilA Streptococcus pneumoniae Rx1

38.889

93.913

0.365
  ssbB/cilA Streptococcus pneumoniae D39

38.889

93.913

0.365
  ssbB/cilA Streptococcus pneumoniae R6

38.889

93.913

0.365
  ssbB/cilA Streptococcus mitis SK321

38.889

93.913

0.365