Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HU689_RS02355 Genome accession   NZ_CP055159
Coordinates   518053..519321 (-) Length   422 a.a.
NCBI ID   WP_096142091.1    Uniprot ID   -
Organism   Shewanella algae strain 2NE11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 513053..524321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU689_RS02325 (HU689_02325) - 514715..514982 (-) 268 Protein_430 transposase -
  HU689_RS02330 (HU689_02330) mutT 515060..515458 (-) 399 WP_025012058.1 8-oxo-dGTP diphosphatase MutT -
  HU689_RS02335 (HU689_02335) yacG 515458..515670 (-) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  HU689_RS02340 (HU689_02340) zapD 515715..516455 (-) 741 WP_028779562.1 cell division protein ZapD -
  HU689_RS02345 (HU689_02345) coaE 516452..517063 (-) 612 WP_025012056.1 dephospho-CoA kinase -
  HU689_RS02350 (HU689_02350) pilD 517064..517978 (-) 915 WP_096142092.1 prepilin peptidase Machinery gene
  HU689_RS02355 (HU689_02355) pilC 518053..519321 (-) 1269 WP_096142091.1 type II secretion system F family protein Machinery gene
  HU689_RS02360 (HU689_02360) pilB 519479..521185 (-) 1707 WP_186265260.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HU689_RS22530 (HU689_02365) - 521254..521595 (-) 342 WP_096142089.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HU689_RS02370 (HU689_02370) nadC 522454..523314 (-) 861 WP_096142088.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HU689_RS02375 (HU689_02375) ampD 523473..524051 (+) 579 WP_186265262.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45985.16 Da        Isoelectric Point: 10.2044

>NTDB_id=456454 HU689_RS02355 WP_096142091.1 518053..519321(-) (pilC) [Shewanella algae strain 2NE11]
MATATATAKSNKSKNKNAKAQPKIHTFTWKGQNRDGKLSSGELRGTSITEIKTLLKSQGINPKTVRKKSTSLLGGDKKIK
AMDIAMFTRQIATMLAAGVPLVTSIELIARGHEKNKVRVLLGTVLADVQAGIPLSDALRPHRVYFDDLYVDLVAAGEHSG
SLDAVFDRIATYKEKAEALKSKIKKAMFYPAAVVVVAVAVTALLLLFVVPQFEEIFSSFGAELPAFTQLIINISRGLQST
WYIFLAVIVISIWLFVRAHRNSEHFRNRIDEMVLKIPLIGEILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNYV
YRKALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIG
TLVGGLIVGMYLPIFNLGNVVG

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=456454 HU689_RS02355 WP_096142091.1 518053..519321(-) (pilC) [Shewanella algae strain 2NE11]
ATGGCCACCGCAACGGCGACAGCAAAAAGCAATAAAAGCAAGAACAAAAACGCTAAAGCCCAACCCAAGATCCATACCTT
TACCTGGAAGGGGCAAAATCGCGACGGCAAACTCAGCTCCGGCGAACTGCGTGGCACCAGTATCACAGAGATAAAAACCC
TGCTTAAGAGCCAGGGAATAAATCCCAAGACGGTACGTAAAAAATCAACATCTCTTTTAGGAGGTGATAAAAAGATAAAA
GCGATGGATATCGCGATGTTCACCCGTCAGATAGCCACTATGCTGGCTGCCGGGGTACCGCTGGTTACTTCCATCGAGCT
GATCGCCCGCGGCCATGAAAAAAACAAGGTGCGGGTACTGCTTGGTACTGTATTGGCCGATGTCCAGGCCGGCATCCCGC
TGTCTGATGCCCTCCGCCCGCACAGAGTCTATTTTGACGACCTCTATGTCGACTTGGTGGCCGCCGGTGAACACTCAGGC
TCTCTGGACGCCGTATTCGACCGTATCGCCACTTATAAGGAAAAAGCCGAAGCCCTTAAATCAAAAATCAAGAAAGCCAT
GTTCTACCCAGCTGCGGTAGTTGTCGTTGCTGTCGCTGTAACTGCTTTATTACTTTTATTTGTAGTTCCTCAGTTTGAAG
AAATATTCAGCAGCTTTGGTGCCGAACTGCCAGCATTTACTCAACTAATTATTAACATTAGTCGAGGACTGCAAAGTACT
TGGTATATATTTCTTGCAGTAATAGTTATAAGCATTTGGCTGTTTGTCCGTGCTCACCGCAACTCAGAGCACTTTCGTAA
CCGTATCGATGAAATGGTATTGAAGATTCCTTTAATCGGAGAAATTCTCCATAAAGGTGCCATGGCCCGTTTTGCCCGCA
CTCTGGCCACCACTTTTGCCGCCGGGGTGCCGCTGATTGATGGCCTAGAGTCTGCCGCCGGCGCCTCCGGCAACTATGTC
TACCGCAAGGCGCTGTTGAATGTGCGCACCGAAGTGATGGCCGGGATGCAGATGAACGTGGCCATGCGCACTACCAAGCT
ATTCCCTGATATGCTAATCCAGATGGTGATGATAGGTGAAGAATCCGGCTCATTGGACAACATGCTCAACAAGATTGCCA
ATATCTACGAGATGCAGGTAGACGATGCCGTAGATGGCCTTTCCAGCCTGATAGAACCTATTATGATGGTAGTTATCGGC
ACCCTGGTAGGCGGGCTTATCGTCGGCATGTATCTACCTATCTTCAACTTAGGTAACGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(87-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.89

94.55

0.528
  pilC Acinetobacter baylyi ADP1

49.754

96.209

0.479
  pilC Legionella pneumophila strain ERS1305867

49.01

95.735

0.469
  pilC Acinetobacter baumannii D1279779

48.039

96.682

0.464
  pilC Vibrio cholerae strain A1552

45.885

95.024

0.436
  pilC Vibrio campbellii strain DS40M4

44.913

95.498

0.429
  pilG Neisseria meningitidis 44/76-A

42.75

94.787

0.405
  pilG Neisseria gonorrhoeae MS11

42.75

94.787

0.405