Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HU689_RS02350 Genome accession   NZ_CP055159
Coordinates   517064..517978 (-) Length   304 a.a.
NCBI ID   WP_096142092.1    Uniprot ID   -
Organism   Shewanella algae strain 2NE11     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512064..522978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU689_RS02325 (HU689_02325) - 514715..514982 (-) 268 Protein_430 transposase -
  HU689_RS02330 (HU689_02330) mutT 515060..515458 (-) 399 WP_025012058.1 8-oxo-dGTP diphosphatase MutT -
  HU689_RS02335 (HU689_02335) yacG 515458..515670 (-) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  HU689_RS02340 (HU689_02340) zapD 515715..516455 (-) 741 WP_028779562.1 cell division protein ZapD -
  HU689_RS02345 (HU689_02345) coaE 516452..517063 (-) 612 WP_025012056.1 dephospho-CoA kinase -
  HU689_RS02350 (HU689_02350) pilD 517064..517978 (-) 915 WP_096142092.1 prepilin peptidase Machinery gene
  HU689_RS02355 (HU689_02355) pilC 518053..519321 (-) 1269 WP_096142091.1 type II secretion system F family protein Machinery gene
  HU689_RS02360 (HU689_02360) pilB 519479..521185 (-) 1707 WP_186265260.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HU689_RS22530 (HU689_02365) - 521254..521595 (-) 342 WP_096142089.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 33819.22 Da        Isoelectric Point: 7.2147

>NTDB_id=456453 HU689_RS02350 WP_096142092.1 517064..517978(-) (pilD) [Shewanella algae strain 2NE11]
MSEFIAVLSHNQWLFLVLCFLFASVIGSFLNVVIHRLPVMMKREWQQECNQYLQEYQPEFAKQLGEAKLNAPIDNYPAKY
NLILPKSACPKCGAHIKPWHNLPIIGYLLLGGKCASCNTAISARYPIFELLTALLISTLGWYLGPTLQFVYATILTFGLI
ALSGIDLDEMLLPDQITLPLLWLGLLVNISGTFTNLTDATIGAAAGYLSLWSVYWLFKLLTGKEGMGYGDFKLMALFGAW
LGWQMLPLIILLSSLVGALVGILLILFKNLNRGNPIPFGPYIAIAGWVALVWGQQIVDWYLGTL

Nucleotide


Download         Length: 915 bp        

>NTDB_id=456453 HU689_RS02350 WP_096142092.1 517064..517978(-) (pilD) [Shewanella algae strain 2NE11]
ATGTCAGAATTTATTGCCGTATTGAGCCACAACCAGTGGCTCTTTCTTGTTCTCTGTTTTTTGTTTGCCTCAGTGATAGG
CAGCTTTCTCAATGTGGTAATCCATCGCCTGCCGGTAATGATGAAGCGCGAATGGCAGCAGGAATGCAATCAATACCTGC
AGGAATATCAACCCGAATTCGCCAAACAGCTGGGTGAAGCCAAGCTTAATGCACCAATAGATAACTATCCGGCCAAATAC
AATCTGATACTGCCGAAGTCTGCCTGCCCCAAGTGTGGCGCCCATATCAAACCCTGGCACAACCTACCCATAATCGGCTA
TTTGTTGCTTGGCGGTAAATGCGCCTCCTGCAACACAGCTATTTCAGCGAGATACCCAATATTTGAGCTGCTGACCGCCC
TGCTTATCAGTACGCTCGGTTGGTATTTGGGCCCGACACTGCAGTTTGTTTACGCCACTATTCTCACCTTTGGATTGATA
GCCCTCAGCGGGATAGATTTGGATGAAATGCTGCTGCCGGATCAGATTACCCTGCCGCTACTGTGGCTTGGTTTACTGGT
TAATATTTCGGGCACCTTTACTAATCTGACCGATGCCACCATAGGGGCCGCTGCCGGCTATTTAAGCCTCTGGTCGGTCT
ACTGGCTATTTAAACTGCTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCAAGCTGATGGCACTGTTTGGCGCCTGG
CTTGGCTGGCAGATGTTACCTCTAATTATTCTGCTCTCTTCTCTGGTCGGAGCCCTAGTAGGCATTTTACTTATTCTGTT
CAAGAACCTTAATCGGGGTAACCCTATCCCCTTTGGCCCTTATATTGCTATCGCAGGTTGGGTCGCTTTGGTGTGGGGGC
AACAGATTGTCGACTGGTATTTGGGAACACTCTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(154-262)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

48.837

99.013

0.484
  pilD Vibrio cholerae strain A1552

49.658

96.053

0.477
  pilD Acinetobacter nosocomialis M2

48.013

99.342

0.477
  pilD Acinetobacter baumannii D1279779

47.682

99.342

0.474
  pilD Neisseria gonorrhoeae MS11

45.552

92.434

0.421