Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HUK78_RS24440 Genome accession   NZ_CP054794
Coordinates   5249974..5251194 (+) Length   406 a.a.
NCBI ID   WP_023101565.1    Uniprot ID   A0A509JJC1
Organism   Pseudomonas aeruginosa strain A0002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5244974..5256194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK78_RS24420 (HUK78_24415) nadC 5246539..5247387 (+) 849 WP_003161760.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HUK78_RS24430 (HUK78_24425) pilA 5247586..5248038 (-) 453 WP_023518088.1 pilin Machinery gene
  HUK78_RS24435 (HUK78_24430) pilB 5248270..5249970 (+) 1701 WP_021264132.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HUK78_RS24440 (HUK78_24435) pilC 5249974..5251194 (+) 1221 WP_023101565.1 type 4a pilus biogenesis protein PilC Machinery gene
  HUK78_RS24445 (HUK78_24440) pilD 5251198..5252070 (+) 873 WP_009875878.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  HUK78_RS24450 (HUK78_24445) coaE 5252067..5252678 (+) 612 WP_003112838.1 dephospho-CoA kinase -
  HUK78_RS24455 (HUK78_24450) yacG 5252675..5252875 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  HUK78_RS24460 (HUK78_24455) - 5252912..5253121 (-) 210 WP_003094660.1 hypothetical protein -
  HUK78_RS24465 (HUK78_24460) - 5253227..5253916 (-) 690 WP_003094662.1 energy-coupling factor ABC transporter permease -
  HUK78_RS24470 (HUK78_24465) - 5253913..5254383 (-) 471 WP_003103866.1 hypothetical protein -
  HUK78_RS24475 (HUK78_24470) - 5254380..5254805 (-) 426 WP_016562341.1 GNAT family N-acetyltransferase -
  HUK78_RS24480 (HUK78_24475) - 5254938..5255567 (+) 630 WP_003094668.1 DUF1780 domain-containing protein -
  HUK78_RS24485 (HUK78_24480) - 5255564..5256013 (+) 450 WP_003094670.1 MOSC domain-containing protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44346.12 Da        Isoelectric Point: 9.8784

>NTDB_id=454739 HUK78_RS24440 WP_023101565.1 5249974..5251194(+) (pilC) [Pseudomonas aeruginosa strain A0002]
MADKALKTSVFIWEGTDKKGAKVKGELTGQNPMLVKAHLRKQGINPLKVRKKGISLLGAGKKVKPMDIALFTRQMATMMG
AGVPLLQSFDIIGEGFDNPNMRKLVDEIKQEVSSGNSLANSLRKKPQYFDELYCNLVDAGEQSGALENLLDRVATYKEKT
ESLKAKIRKAMTYPIAVIIVALIVSAILLIKVVPQFQSVFQGFGAELPAFTQMVVNLSEFLQEWWLAVIVGVGVIGFTFK
ELHKRSKKFRDTLDRTILKLPIFGGIVYKSAVARYARTLSTTFAAGVPLVDALDSVSGATGNIVFKNAVSKIKQDVSTGM
QLNFSMRTTSVFPNMAIQMTAIGEESGSLDEMLSKVASYYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLIVAMYLPIFQ
LGNVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=454739 HUK78_RS24440 WP_023101565.1 5249974..5251194(+) (pilC) [Pseudomonas aeruginosa strain A0002]
ATGGCGGACAAAGCGTTAAAAACCAGCGTTTTCATCTGGGAGGGCACCGACAAGAAAGGCGCCAAGGTCAAGGGCGAACT
GACCGGGCAGAATCCCATGCTGGTGAAGGCCCATCTGCGCAAGCAGGGCATCAATCCGCTCAAGGTACGCAAGAAAGGTA
TCTCCCTGCTGGGCGCAGGCAAGAAAGTCAAACCCATGGACATCGCCCTGTTCACCCGGCAGATGGCGACCATGATGGGT
GCTGGCGTTCCCCTCCTGCAATCGTTCGACATCATCGGCGAAGGCTTCGACAATCCCAACATGCGCAAGCTGGTGGATGA
GATCAAGCAGGAAGTGTCCTCGGGCAACAGCCTGGCCAACTCACTGAGAAAGAAACCGCAGTACTTCGACGAACTCTATT
GCAACCTGGTCGATGCCGGCGAGCAATCGGGCGCCTTGGAAAACTTGCTGGATAGAGTCGCGACCTACAAGGAAAAAACG
GAATCGTTAAAAGCAAAGATCAGGAAGGCGATGACTTATCCTATCGCCGTCATCATCGTTGCCTTAATCGTCTCCGCCAT
TCTTCTGATCAAGGTCGTCCCGCAGTTCCAATCCGTATTCCAAGGTTTTGGCGCAGAGCTGCCTGCATTCACTCAAATGG
TCGTAAATTTATCCGAGTTCCTACAGGAATGGTGGCTTGCCGTCATCGTTGGCGTGGGGGTGATTGGCTTTACCTTCAAG
GAACTGCATAAACGCTCAAAAAAATTCCGCGACACACTCGACAGAACGATCCTCAAACTTCCCATTTTCGGAGGCATCGT
CTACAAATCTGCGGTCGCTCGTTATGCACGGACCTTGTCCACGACCTTCGCCGCGGGTGTTCCCCTGGTCGATGCGCTCG
ACTCCGTCTCCGGAGCGACCGGCAATATCGTGTTCAAGAACGCGGTCAGCAAGATCAAGCAAGACGTTTCCACCGGCATG
CAGCTCAACTTCTCCATGCGCACCACCAGCGTCTTTCCCAACATGGCGATCCAGATGACCGCCATCGGCGAGGAGTCCGG
TTCGCTCGATGAGATGCTGAGCAAAGTCGCCAGCTACTACGAAGAGGAAGTCGACAACGCCGTGGACAACCTCACCACGC
TCATGGAACCGATGATCATGGCCGTTCTCGGCGTACTGGTTGGCGGTCTGATCGTGGCCATGTACCTTCCGATCTTCCAA
CTCGGCAACGTCGTCGGATAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

77.037

99.754

0.768
  pilC Acinetobacter baumannii D1279779

60.644

99.507

0.603
  pilC Acinetobacter baylyi ADP1

60.345

100

0.603
  pilC Legionella pneumophila strain ERS1305867

54.545

97.537

0.532
  pilG Neisseria meningitidis 44/76-A

45.658

99.261

0.453
  pilG Neisseria gonorrhoeae MS11

45.409

99.261

0.451
  pilC Vibrio cholerae strain A1552

42.365

100

0.424
  pilC Vibrio campbellii strain DS40M4

41.604

98.276

0.409
  pilC Thermus thermophilus HB27

36.908

98.768

0.365