Detailed information NTG0454737

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FNX50_RS04840
• Genome accession: NZ_CP066366
• Coordinates: 1004812..1005804 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AR Bank #0346
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 999812..1010804

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNX50_RS04810 (FNX50_04810)	ispD	999873..1000583 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FNX50_RS04815 (FNX50_04815)	ispF	1000583..1001062 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FNX50_RS04820 (FNX50_04820)	truD	1001059..1002108 (+)	1050	WP_208285493.1	tRNA pseudouridine(13) synthase TruD	-
FNX50_RS04825 (FNX50_04825)	surE	1002089..1002850 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FNX50_RS04830 (FNX50_04830)	pcm	1002844..1003470 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FNX50_RS04835 (FNX50_04835)	nlpD	1003655..1004749 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
FNX50_RS04840 (FNX50_04840)	rpoS	1004812..1005804 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FNX50_RS04845 (FNX50_04845)	ygbN	1005898..1007262 (-)	1365	WP_049254918.1	GntP family transporter	-
FNX50_RS04850 (FNX50_04850)	ygbM	1007351..1008127 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
FNX50_RS04855 (FNX50_04855)	ygbL	1008132..1008770 (-)	639	WP_001278994.1	aldolase	-
FNX50_RS04860 (FNX50_04860)	otnK	1008767..1010029 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=454737 FNX50_RS04840 WP_000081550.1 1004812..1005804(+) (rpoS) [Escherichia coli strain AR Bank #0346]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=454737 FNX50_RS04840 WP_000081550.1 1004812..1005804(+) (rpoS) [Escherichia coli strain AR Bank #0346]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715