Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FOC72_RS10985 Genome accession   NZ_CP054570
Coordinates   2255382..2256638 (+) Length   418 a.a.
NCBI ID   WP_032914005.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain FDAARGOS_770     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2250382..2261638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC72_RS10960 (FOC72_10960) - 2250435..2250773 (+) 339 WP_002894090.1 hypothetical protein -
  FOC72_RS10965 (FOC72_10965) - 2250841..2252823 (+) 1983 WP_002894089.1 ABC transporter permease -
  FOC72_RS10970 (FOC72_10970) - 2252823..2253446 (+) 624 WP_002894088.1 ATP-binding cassette domain-containing protein -
  FOC72_RS10975 (FOC72_10975) - 2253443..2253934 (+) 492 WP_002894087.1 hypothetical protein -
  FOC72_RS10980 (FOC72_10980) - 2254701..2255111 (-) 411 WP_002894082.1 helix-turn-helix domain-containing protein -
  FOC72_RS10985 (FOC72_10985) cinA 2255382..2256638 (+) 1257 WP_032914005.1 competence/damage-inducible protein A Machinery gene
  FOC72_RS10990 (FOC72_10990) recA 2256696..2257844 (+) 1149 WP_002894079.1 recombinase RecA Machinery gene
  FOC72_RS10995 (FOC72_10995) spx 2257930..2258328 (+) 399 WP_002894078.1 transcriptional regulator Spx -
  FOC72_RS11000 (FOC72_11000) - 2258464..2259036 (+) 573 WP_002894077.1 SP0191 family lipoprotein -
  FOC72_RS11005 (FOC72_11005) - 2259142..2259684 (+) 543 WP_002894076.1 hypothetical protein -
  FOC72_RS11010 (FOC72_11010) - 2259863..2260129 (+) 267 WP_002894075.1 IreB family regulatory phosphoprotein -
  FOC72_RS11015 (FOC72_11015) ruvX 2260129..2260548 (+) 420 WP_002894074.1 Holliday junction resolvase RuvX -
  FOC72_RS11020 (FOC72_11020) - 2260573..2260884 (+) 312 WP_002894073.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 44829.91 Da        Isoelectric Point: 4.6469

>NTDB_id=453531 FOC72_RS10985 WP_032914005.1 2255382..2256638(+) (cinA) [Streptococcus sanguinis strain FDAARGOS_770]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLASLGIDVYFQTAVGDNENRLLSVLEIAQRRSNLIILTGGLGPTEDDLTKQT
LAKFLGRELNFDSQAVEKLDRFFASRPDYARTPNNERQAQLVGGSTPLPNATGLAVGGLLEADGVTYVVLPGPPSELKPM
VNNELVPLLSTGQKLYSRVLRFFGIGESQLVTILSEMIEQQSDPTIAPYAKTGEVTLRLSTKALSQAEADTKFEAVEKEI
LAYKTFEGQPLSEIFYGYGDDNSLAQVAFELLKSQGKTISAAESLTAGLFQATLADFAGASSIFSGGFVTYSMEEKSRML
DIPLGDLEEHGVVSAFTAGKMAEQARKLTESDLAVSLTGVAGPDSLEDHPAGTVFIGLASASGTETIKVNIAGRSRRDVR
KIAVLHAFNLVRKTLLNS

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=453531 FOC72_RS10985 WP_032914005.1 2255382..2256638(+) (cinA) [Streptococcus sanguinis strain FDAARGOS_770]
ATGAAAGCAGAAATTATTGCTGTGGGCACCGAGATTCTGACGGGTCAGATTGTCAATACCAATGCCCAATTTTTATCTGA
AAAACTGGCGAGTCTGGGGATTGATGTCTATTTTCAAACAGCAGTGGGGGACAATGAAAATCGTCTCCTCTCTGTTTTGG
AAATTGCCCAAAGGCGCAGTAATCTGATTATCCTGACAGGAGGCTTGGGGCCTACGGAAGATGATTTGACCAAGCAGACC
TTGGCTAAGTTCTTAGGGCGCGAGCTCAATTTTGACTCACAGGCTGTGGAAAAGCTGGATCGCTTTTTTGCTAGTCGACC
GGATTATGCTCGAACTCCCAATAATGAGCGTCAGGCCCAGCTAGTCGGAGGCTCGACGCCGTTACCAAATGCGACCGGCT
TAGCTGTCGGAGGCTTGTTAGAAGCAGACGGAGTGACCTATGTAGTTCTGCCTGGCCCGCCTAGCGAGCTTAAACCTATG
GTCAATAATGAGCTGGTTCCCCTCTTATCCACAGGTCAGAAACTGTATTCACGGGTGCTGCGATTCTTTGGTATTGGCGA
GAGTCAGCTAGTGACTATTTTGTCAGAGATGATTGAGCAGCAGAGTGACCCCACTATTGCTCCTTATGCAAAGACGGGAG
AGGTTACCCTGCGACTGTCCACCAAGGCCCTGAGTCAGGCAGAAGCTGACACCAAGTTTGAGGCTGTGGAAAAGGAAATT
TTGGCATATAAGACTTTTGAGGGACAGCCCTTGTCAGAGATTTTCTATGGTTACGGCGATGACAATTCCTTGGCACAGGT
GGCTTTTGAGTTGCTGAAGAGTCAAGGGAAGACGATTTCGGCGGCGGAGAGTCTGACAGCAGGCCTCTTTCAAGCGACCT
TGGCTGATTTTGCTGGAGCCTCTTCCATTTTTTCAGGTGGCTTTGTCACCTACAGCATGGAGGAAAAGAGCCGGATGCTG
GATATTCCGTTGGGAGACTTGGAGGAGCATGGAGTTGTTTCAGCTTTTACGGCAGGGAAAATGGCAGAGCAGGCTAGAAA
GCTGACCGAAAGCGACTTAGCTGTCAGTTTGACAGGTGTGGCAGGCCCAGATTCACTGGAAGATCATCCTGCAGGGACCG
TTTTTATCGGTTTAGCTAGTGCTTCAGGAACGGAAACTATTAAGGTCAATATTGCTGGACGCAGTCGTCGTGATGTGCGG
AAAATTGCTGTTCTGCACGCCTTCAACCTAGTACGAAAAACTTTATTAAATAGCTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-240)

Competence-damaged protein (CinA)

(262-415)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

78.177

99.761

0.78
  cinA Streptococcus mitis NCTC 12261

77.698

99.761

0.775
  cinA Streptococcus pneumoniae TIGR4

76.978

99.761

0.768
  cinA Streptococcus pneumoniae Rx1

76.978

99.761

0.768
  cinA Streptococcus pneumoniae R6

76.978

99.761

0.768
  cinA Streptococcus pneumoniae D39

76.739

99.761

0.766
  cinA Streptococcus mutans UA159

74.88

100

0.749
  cinA Streptococcus suis isolate S10

55.048

99.522

0.548
  cinA Bacillus subtilis subsp. subtilis str. 168

46.411

100

0.464