Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HUE57_RS07890 Genome accession   NZ_CP054491
Coordinates   1389310..1390536 (-) Length   408 a.a.
NCBI ID   WP_078482456.1    Uniprot ID   -
Organism   Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1384310..1395536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUE57_RS07860 (HUE57_07860) argJ 1384483..1385703 (+) 1221 WP_078482461.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  HUE57_RS07865 (HUE57_07865) - 1385728..1386690 (+) 963 WP_236725611.1 Nudix family hydrolase -
  HUE57_RS07870 (HUE57_07870) yacG 1386687..1386884 (-) 198 WP_078482460.1 DNA gyrase inhibitor YacG -
  HUE57_RS07875 (HUE57_07875) zapD 1386903..1387676 (-) 774 WP_078482459.1 cell division protein ZapD -
  HUE57_RS07880 (HUE57_07880) coaE 1387763..1388365 (-) 603 WP_078482458.1 dephospho-CoA kinase -
  HUE57_RS07885 (HUE57_07885) pilD 1388379..1389242 (-) 864 WP_078482457.1 prepilin peptidase Machinery gene
  HUE57_RS07890 (HUE57_07890) pilC 1389310..1390536 (-) 1227 WP_078482456.1 type II secretion system F family protein Machinery gene
  HUE57_RS07895 (HUE57_07895) pilB 1390546..1392258 (-) 1713 Protein_1589 type IV-A pilus assembly ATPase PilB -
  HUE57_RS19940 - 1392875..1393021 (+) 147 WP_320416282.1 hypothetical protein -
  HUE57_RS07900 (HUE57_07900) - 1393036..1394081 (+) 1046 Protein_1591 DegT/DnrJ/EryC1/StrS family aminotransferase -
  HUE57_RS19600 (HUE57_07905) - 1394131..1394397 (+) 267 WP_174672986.1 WbqC family protein -
  HUE57_RS19605 (HUE57_07910) - 1394420..1394782 (+) 363 Protein_1593 WbqC family protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44442.49 Da        Isoelectric Point: 9.6812

>NTDB_id=452872 HUE57_RS07890 WP_078482456.1 1389310..1390536(-) (pilC) [Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall]
MAEQASQKQLTFAWIGTDKKGRKVKGETNATNAVAVKADLRRQGIAPIKVNKKASPLFGGQRKQKITTGDIAVFARQLAT
MMSAGVPLVQSFEIVGRGHDNPSMANLLLGIKADIEGGTTLAEALGKHRIYFDDLFCNLVKAGEQAGVLEELLHKIATYL
EKTEAIKKKIKKALFYPVAVIVVAFIVTTILMIFVIPQFQDLFANFGAELPAFTLWVIGLSIFFQEWWWAIFGVIGLAVT
AFMDAKKKSRKFAHALDRMALKMPIFGVILHKSAVARYARTLSTMFAAGVPLVEALESVAGATGNIVYSEAVMQMRENVA
TGQQLQLAMKQTNIFPSMVIQMVAIGEESGSLDSMLSKVADFYEEEVDNAVDAMSSLMEPLIMAVLGVLIGGLIIAMYLP
IFKLGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=452872 HUE57_RS07890 WP_078482456.1 1389310..1390536(-) (pilC) [Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall]
ATGGCGGAACAAGCATCGCAGAAACAGCTGACCTTTGCATGGATCGGGACTGATAAAAAGGGCAGAAAGGTCAAAGGTGA
AACCAATGCCACGAATGCTGTGGCAGTTAAGGCTGATCTGCGGCGCCAGGGCATCGCCCCTATCAAGGTCAACAAAAAAG
CCTCGCCCCTCTTTGGCGGCCAACGAAAACAGAAAATCACGACAGGTGACATCGCTGTTTTTGCACGTCAGCTGGCAACC
ATGATGTCTGCGGGTGTACCACTGGTACAGTCTTTTGAGATTGTAGGCAGAGGGCATGACAATCCCAGTATGGCTAACCT
ACTGCTAGGTATTAAGGCTGATATTGAGGGCGGAACAACGCTTGCCGAGGCTTTAGGAAAACATCGCATATATTTTGACG
ATCTCTTTTGTAACCTCGTCAAAGCAGGTGAGCAGGCCGGTGTTCTTGAAGAACTCCTGCACAAGATCGCTACCTACCTT
GAGAAGACTGAGGCGATCAAGAAAAAGATCAAAAAAGCTCTCTTCTATCCTGTCGCGGTAATTGTTGTTGCCTTCATCGT
TACGACCATTCTCATGATCTTTGTTATTCCGCAATTTCAGGACCTATTCGCCAATTTTGGTGCTGAACTTCCTGCCTTCA
CCCTTTGGGTCATCGGTTTATCAATCTTCTTCCAGGAGTGGTGGTGGGCTATTTTCGGCGTGATCGGACTTGCTGTGACG
GCATTTATGGATGCCAAGAAGAAATCTAGAAAATTTGCACATGCACTCGACAGAATGGCGCTAAAGATGCCAATTTTCGG
CGTGATTCTGCATAAATCAGCTGTAGCTCGCTACGCACGAACTCTATCTACAATGTTCGCCGCCGGTGTTCCACTAGTTG
AGGCCCTTGAGTCAGTGGCAGGCGCTACCGGCAACATCGTCTATTCAGAAGCTGTTATGCAGATGCGTGAAAATGTCGCA
ACTGGTCAGCAGCTTCAACTTGCTATGAAGCAGACCAATATCTTCCCCAGCATGGTCATTCAGATGGTCGCCATTGGTGA
GGAGTCTGGTTCACTCGATAGCATGCTCAGCAAGGTTGCCGACTTCTATGAAGAGGAGGTCGACAATGCTGTCGACGCCA
TGAGCAGCCTCATGGAGCCGTTAATTATGGCTGTACTGGGTGTCCTGATCGGTGGTTTGATTATCGCCATGTACCTCCCC
ATCTTCAAGCTGGGTTCTGTCGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.36

99.51

0.591
  pilC Legionella pneumophila strain ERS1305867

59.36

99.51

0.591
  pilC Acinetobacter baumannii D1279779

59.069

100

0.591
  pilC Acinetobacter baylyi ADP1

55.637

100

0.556
  pilG Neisseria meningitidis 44/76-A

48.02

99.02

0.475
  pilG Neisseria gonorrhoeae MS11

47.772

99.02

0.473
  pilC Vibrio cholerae strain A1552

40.955

97.549

0.4
  pilC Vibrio campbellii strain DS40M4

39.801

98.529

0.392
  pilC Thermus thermophilus HB27

36.232

100

0.368