Detailed information NTG0452871

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HUE57_RS07885
• Genome accession: NZ_CP054491
• Coordinates: 1388379..1389242 (-)
• Length: 287 a.a.
• NCBI ID: WP_078482457.1
• Uniprot ID: -
• Organism: Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1383379..1394242

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUE57_RS07860 (HUE57_07860)	argJ	1384483..1385703 (+)	1221	WP_078482461.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
HUE57_RS07865 (HUE57_07865)	-	1385728..1386690 (+)	963	WP_236725611.1	Nudix family hydrolase	-
HUE57_RS07870 (HUE57_07870)	yacG	1386687..1386884 (-)	198	WP_078482460.1	DNA gyrase inhibitor YacG	-
HUE57_RS07875 (HUE57_07875)	zapD	1386903..1387676 (-)	774	WP_078482459.1	cell division protein ZapD	-
HUE57_RS07880 (HUE57_07880)	coaE	1387763..1388365 (-)	603	WP_078482458.1	dephospho-CoA kinase	-
HUE57_RS07885 (HUE57_07885)	pilD	1388379..1389242 (-)	864	WP_078482457.1	prepilin peptidase	Machinery gene
HUE57_RS07890 (HUE57_07890)	pilC	1389310..1390536 (-)	1227	WP_078482456.1	type II secretion system F family protein	Machinery gene
HUE57_RS07895 (HUE57_07895)	pilB	1390546..1392258 (-)	1713	Protein_1589	type IV-A pilus assembly ATPase PilB	-
HUE57_RS19940	-	1392875..1393021 (+)	147	WP_320416282.1	hypothetical protein	-
HUE57_RS07900 (HUE57_07900)	-	1393036..1394081 (+)	1046	Protein_1591	DegT/DnrJ/EryC1/StrS family aminotransferase	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 31616.37 Da
• Isoelectric Point: 5.1830

>NTDB_id=452871 HUE57_RS07885 WP_078482457.1 1388379..1389242(-) (pilD) [Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall]
MIVDLLQTNLALLLSCTALFGLIIGSFLNVVIHRLPIMMERDWRAQCEEFLNDNETTENTAFNLLAPGSRCPKCEHSITA
LENIPLASYLWLKGRCSECGTPISPRYPIIELVTAILSVTVVWHFGFTIQAAAALALTWALITLSMIDFDQQLLPDSITL
PFLWLGLILSLFGVFVDSHTSIIGALAGYLSLWAIFHLFRLLTGKEGMGYGDFKLLALFGAWLGWQLLPVVILLSSLVGA
VVGISLIVLRGHDRNIPIPFGPYLAAAGWIAMLWGQDLTQAYLAWAT

Nucleotide

• Length: 864 bp

>NTDB_id=452871 HUE57_RS07885 WP_078482457.1 1388379..1389242(-) (pilD) [Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall]
ATGATTGTTGATCTACTACAAACCAACCTAGCGTTACTTCTCTCCTGCACTGCACTCTTTGGTCTAATCATCGGCAGCTT
CCTCAATGTGGTAATCCATCGACTACCAATTATGATGGAACGCGATTGGCGTGCTCAGTGTGAAGAATTTCTAAACGACA
ATGAGACGACTGAGAACACAGCCTTCAACCTTTTAGCACCCGGCTCTCGTTGTCCAAAATGCGAGCACTCAATCACTGCA
CTTGAGAACATCCCGCTCGCCAGTTACCTCTGGTTGAAGGGAAGATGCTCAGAATGTGGCACCCCTATCTCTCCCCGTTA
TCCGATTATCGAACTTGTCACCGCCATACTATCAGTCACGGTTGTCTGGCATTTTGGATTCACCATCCAGGCAGCCGCTG
CACTCGCACTTACCTGGGCATTGATCACCCTTTCAATGATCGATTTCGACCAGCAGCTTCTTCCCGACTCCATCACCCTC
CCCTTTCTCTGGTTGGGCCTGATCCTAAGTCTTTTCGGTGTATTCGTAGATAGTCACACCAGCATCATTGGCGCGCTTGC
TGGATACCTATCACTCTGGGCTATTTTTCACCTGTTCAGACTACTTACCGGCAAGGAGGGTATGGGCTACGGCGATTTCA
AACTACTCGCTCTCTTTGGAGCCTGGTTAGGTTGGCAACTGCTGCCAGTCGTCATCCTGCTCTCATCTCTGGTAGGCGCT
GTGGTTGGTATTTCACTCATCGTGCTGCGAGGCCACGACCGAAATATCCCGATACCTTTTGGCCCCTATCTAGCCGCTGC
TGGCTGGATTGCCATGCTCTGGGGTCAAGATCTAACGCAGGCCTACCTGGCATGGGCCACCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-125)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.019	93.728	0.516
pilD	Acinetobacter nosocomialis M2	50	98.955	0.495
pilD	Acinetobacter baumannii D1279779	49.648	98.955	0.491
pilD	Vibrio campbellii strain DS40M4	47.703	98.606	0.47
pilD	Neisseria gonorrhoeae MS11	49.077	94.425	0.463