Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SDSE_RS22115 Genome accession   NC_019042
Coordinates   1688099..1688764 (-) Length   221 a.a.
NCBI ID   WP_012767419.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis AC-2713     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1683099..1693764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDSE_RS18890 (S_dysgal_equisimilis_AC2713_1749) - 1686538..1687422 (-) 885 Protein_1594 IS30 family transposase -
  SDSE_RS18895 (S_dysgal_equisimilis_AC2713_1750) raiA 1687471..1688019 (-) 549 WP_014612499.1 ribosome-associated translation inhibitor RaiA -
  SDSE_RS22115 (S_dysgal_equisimilis_AC2713_1751) comFC/cflB 1688099..1688764 (-) 666 WP_012767419.1 ComF family protein Machinery gene
  SDSE_RS18905 (S_dysgal_equisimilis_AC2713_1752) comFA/cflA 1688736..1690061 (-) 1326 WP_015057974.1 DEAD/DEAH box helicase Machinery gene
  SDSE_RS18910 (S_dysgal_equisimilis_AC2713_1753) - 1690117..1690755 (+) 639 WP_015057975.1 YigZ family protein -
  SDSE_RS18915 (S_dysgal_equisimilis_AC2713_1754) cysK 1690859..1691794 (+) 936 WP_003062335.1 cysteine synthase A -
  SDSE_RS18920 (S_dysgal_equisimilis_AC2713_1755) - 1691947..1692306 (-) 360 WP_003056775.1 S1 RNA-binding domain-containing protein -
  SDSE_RS18925 (S_dysgal_equisimilis_AC2713_1756) - 1692306..1693706 (-) 1401 WP_015057976.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25364.39 Da        Isoelectric Point: 8.7003

>NTDB_id=45263 SDSE_RS22115 WP_012767419.1 1688099..1688764(-) (comFC/cflB) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
MICLLCQQFSPLPLRITDILFLKPQTTTLCQECQQGFQKISFTSCQTCNAPSQSSPCSDCLEWKVKGYEVNHKSLYQYNA
AMKAYFSQYKFQGDYLLRHVFAQELAQVIKKDYPDFTPVPVPISKERYEERHFNQVTAILEAGNINYCMLFKRMDTSRQS
SKTKNERLLSKDAYRLSTLSELPAKILIIDDIYTTGSTIIALKKLLMHVGNSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=45263 SDSE_RS22115 WP_012767419.1 1688099..1688764(-) (comFC/cflB) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
ATGATATGCCTCCTATGTCAACAATTTAGTCCATTACCCTTGCGAATAACGGATATTCTCTTTTTGAAACCTCAAACAAC
AACTCTCTGTCAGGAGTGTCAACAAGGGTTTCAAAAGATAAGCTTCACGAGTTGCCAAACCTGTAACGCTCCTTCCCAAA
GCTCTCCATGTTCTGATTGTTTAGAATGGAAAGTCAAAGGATACGAGGTTAATCACAAAAGTTTATATCAGTATAACGCT
GCTATGAAAGCTTATTTTAGCCAATATAAGTTTCAAGGAGACTACTTGCTAAGACATGTCTTTGCTCAAGAATTAGCCCA
AGTTATTAAAAAAGACTATCCAGATTTTACTCCTGTTCCAGTTCCTATCAGTAAGGAGCGTTATGAAGAACGTCATTTCA
ATCAAGTGACTGCTATACTTGAAGCAGGGAATATTAACTATTGCATGCTTTTTAAAAGAATGGATACTAGCCGTCAGTCT
TCTAAAACTAAAAATGAAAGATTATTATCCAAAGATGCCTATCGTCTCTCCACCCTCTCTGAATTACCAGCAAAAATCCT
CATTATTGATGATATTTACACTACCGGTAGCACCATTATCGCTTTGAAAAAACTATTAATGCATGTTGGAAATAGTGACA
TCAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae TIGR4

40.724

100

0.407
  comFC/cflB Streptococcus pneumoniae Rx1

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae D39

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae R6

40.271

100

0.403

Multiple sequence alignment