Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HPE52_RS12800 Genome accession   NZ_CP054345
Coordinates   2641326..2641955 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain SCU-176     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2636326..2646955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPE52_RS12785 (HPE52_12785) helD 2636568..2638622 (-) 2055 WP_001538528.1 DNA helicase IV -
  HPE52_RS12790 (HPE52_12790) yccF 2638745..2639191 (+) 447 WP_001261236.1 YccF domain-containing protein -
  HPE52_RS12795 (HPE52_12795) yccS 2639201..2641363 (+) 2163 WP_000875041.1 YccS family putative transporter -
  HPE52_RS12800 (HPE52_12800) sxy/tfoX 2641326..2641955 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HPE52_RS12805 (HPE52_12805) sulA 2642174..2642683 (+) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  HPE52_RS12810 (HPE52_12810) ompA 2643039..2644079 (+) 1041 WP_001313715.1 porin OmpA -
  HPE52_RS12815 (HPE52_12815) matP 2644157..2644609 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  HPE52_RS12820 (HPE52_12820) ycbZ 2644795..2646555 (+) 1761 WP_000156498.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=451997 HPE52_RS12800 WP_000839136.1 2641326..2641955(-) (sxy/tfoX) [Escherichia coli strain SCU-176]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=451997 HPE52_RS12800 WP_000839136.1 2641326..2641955(-) (sxy/tfoX) [Escherichia coli strain SCU-176]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99