Detailed information NTG0451425

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: HRH33_RS04845
• Genome accession: NZ_CP054205
• Coordinates: 1094208..1095416 (-)
• Length: 402 a.a.
• NCBI ID: WP_167418609.1
• Uniprot ID: -
• Organism: Pseudomonas rhodesiae strain NL2019
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1089208..1100416

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HRH33_RS04805 (HRH33_04805)	-	1090135..1090308 (-)	174	WP_034095827.1	DUF3094 family protein	-
HRH33_RS04810 (HRH33_04810)	-	1090362..1090991 (-)	630	WP_017845475.1	DUF1780 domain-containing protein	-
HRH33_RS04815 (HRH33_04815)	-	1091094..1091561 (+)	468	WP_167418611.1	FAD/FMN-containing dehydrogenase	-
HRH33_RS04820 (HRH33_04820)	-	1091558..1092247 (+)	690	WP_034095830.1	energy-coupling factor ABC transporter permease	-
HRH33_RS04825 (HRH33_04825)	-	1092313..1092528 (+)	216	WP_003171680.1	hypothetical protein	-
HRH33_RS04830 (HRH33_04830)	yacG	1092525..1092725 (-)	201	WP_034095831.1	DNA gyrase inhibitor YacG	-
HRH33_RS04835 (HRH33_04835)	coaE	1092722..1093348 (-)	627	WP_034111714.1	dephospho-CoA kinase	-
HRH33_RS04840 (HRH33_04840)	pilD	1093345..1094211 (-)	867	WP_167418610.1	A24 family peptidase	Machinery gene
HRH33_RS04845 (HRH33_04845)	pilC	1094208..1095416 (-)	1209	WP_167418609.1	type II secretion system F family protein	Machinery gene
HRH33_RS04850 (HRH33_04850)	-	1095620..1096033 (+)	414	WP_167418613.1	pilin	-
HRH33_RS04855 (HRH33_04855)	-	1096069..1097469 (+)	1401	WP_167418608.1	O-antigen ligase family protein	-
HRH33_RS04865 (HRH33_04865)	-	1097740..1098045 (+)	306	WP_034095837.1	DUF6388 family protein	-
HRH33_RS04870 (HRH33_04870)	nadC	1098115..1098963 (-)	849	WP_167418607.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 402 a.a.
• Molecular weight: 43180.69 Da
• Isoelectric Point: 10.1878

>NTDB_id=451425 HRH33_RS04845 WP_167418609.1 1094208..1095416(-) (pilC) [Pseudomonas rhodesiae strain NL2019]
MNNAVTLYTWEGINRKGRKVSGQSTGRSPAVVKAQLRQQGIRPGRVRKSIPRLPGLAAPIKAADITLLTRQLATLLKAGI
PLLQAFDLISEGVEKPPVGELLQSLRQQVAAGTNLTEALRNHPRYFDELYCHLVAAGEQAGALETLLERLAVHREKSEQL
KARIKKAMTYPIAVVVVAGLVTGVLLVHVVPQFQSLFAGVDGKLPGFTLAVIALSEFMQHAWWIVALGLGVGVIGLRQAC
RKSPIFRHWLDAGLLKAPLAGKLLQKSAVARYARTLSTTFAAGVPLVQALDSVAGAAGSAPYKQAIEHMRRDVSTGMPLN
HAMATSGLFPGMAIQMTAIGEESGTLDFMLEKVASHYETEVDNQVDHLTSLMEPLIMVVLGGIVGALVIAMYLPIFQLGS
AF

Nucleotide

• Length: 1209 bp

>NTDB_id=451425 HRH33_RS04845 WP_167418609.1 1094208..1095416(-) (pilC) [Pseudomonas rhodesiae strain NL2019]
ATGAACAACGCTGTAACGCTTTACACCTGGGAAGGCATCAACCGCAAAGGCCGCAAGGTGTCCGGCCAAAGCACCGGACG
CAGCCCTGCCGTGGTCAAGGCGCAACTGCGCCAACAAGGCATCCGCCCCGGCCGTGTGCGCAAGTCAATCCCACGGCTGC
CAGGCCTGGCCGCGCCGATCAAAGCCGCCGACATAACCTTGCTCACCCGCCAGTTGGCCACGTTGCTGAAGGCCGGTATT
CCCCTGCTGCAAGCCTTCGATCTGATCAGCGAAGGTGTCGAGAAGCCGCCTGTGGGTGAACTGCTGCAAAGCCTGAGACA
ACAGGTCGCCGCCGGCACAAATCTGACTGAAGCGTTACGCAATCACCCGCGTTATTTCGATGAGCTGTACTGCCATTTGG
TAGCGGCCGGCGAACAGGCCGGCGCGCTTGAGACGCTGCTGGAGCGCCTGGCGGTTCATCGCGAAAAGAGCGAGCAGCTC
AAAGCCAGGATCAAAAAAGCCATGACCTACCCCATCGCGGTCGTAGTCGTGGCCGGGCTGGTCACTGGCGTGCTGCTGGT
GCATGTGGTGCCGCAGTTCCAGAGCCTGTTCGCAGGAGTGGACGGTAAGCTGCCGGGCTTCACCCTCGCCGTTATCGCCC
TGTCGGAGTTCATGCAACATGCCTGGTGGATCGTCGCGCTGGGGCTTGGTGTGGGGGTTATTGGCCTGCGTCAGGCCTGT
CGAAAATCGCCAATCTTTCGCCATTGGCTGGACGCCGGTTTGTTGAAAGCACCGCTGGCAGGCAAACTGCTGCAAAAATC
GGCCGTGGCTCGCTACGCCCGTACGCTTTCAACCACCTTCGCGGCGGGGGTTCCGCTGGTGCAGGCCCTGGATTCAGTGG
CGGGTGCCGCGGGCTCCGCCCCCTACAAACAGGCAATCGAGCATATGCGTCGCGATGTATCCACAGGTATGCCGTTGAAT
CACGCCATGGCCACCAGTGGTCTGTTTCCAGGGATGGCGATTCAGATGACGGCAATCGGCGAAGAATCCGGCACGCTGGA
CTTCATGCTGGAAAAAGTCGCCAGCCACTACGAAACCGAAGTGGATAACCAGGTCGATCACCTCACCAGCCTGATGGAGC
CGCTGATCATGGTCGTACTGGGAGGCATCGTCGGGGCGTTGGTCATTGCCATGTACTTACCGATCTTCCAACTGGGGAGC
GCATTTTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (273-394)

• Type II secretion system (T2SS), protein F (T2SSF) (69-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	57.975	98.259	0.57
pilC	Acinetobacter baylyi ADP1	50.758	98.507	0.5
pilC	Acinetobacter baumannii D1279779	50.633	98.259	0.498
pilC	Legionella pneumophila strain ERS1305867	50.38	98.259	0.495
pilC	Vibrio cholerae strain A1552	43.544	98.259	0.428
pilC	Vibrio campbellii strain DS40M4	42.386	98.01	0.415
pilG	Neisseria gonorrhoeae MS11	41.814	98.756	0.413
pilG	Neisseria meningitidis 44/76-A	41.058	98.756	0.405
pilC	Thermus thermophilus HB27	36.591	99.254	0.363