Detailed information NTG0451424

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HRH33_RS04840
• Genome accession: NZ_CP054205
• Coordinates: 1093345..1094211 (-)
• Length: 288 a.a.
• NCBI ID: WP_167418610.1
• Uniprot ID: -
• Organism: Pseudomonas rhodesiae strain NL2019
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1088345..1099211

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HRH33_RS04800 (HRH33_04800)	-	1088776..1090074 (-)	1299	WP_167418612.1	NAD(P)/FAD-dependent oxidoreductase	-
HRH33_RS04805 (HRH33_04805)	-	1090135..1090308 (-)	174	WP_034095827.1	DUF3094 family protein	-
HRH33_RS04810 (HRH33_04810)	-	1090362..1090991 (-)	630	WP_017845475.1	DUF1780 domain-containing protein	-
HRH33_RS04815 (HRH33_04815)	-	1091094..1091561 (+)	468	WP_167418611.1	FAD/FMN-containing dehydrogenase	-
HRH33_RS04820 (HRH33_04820)	-	1091558..1092247 (+)	690	WP_034095830.1	energy-coupling factor ABC transporter permease	-
HRH33_RS04825 (HRH33_04825)	-	1092313..1092528 (+)	216	WP_003171680.1	hypothetical protein	-
HRH33_RS04830 (HRH33_04830)	yacG	1092525..1092725 (-)	201	WP_034095831.1	DNA gyrase inhibitor YacG	-
HRH33_RS04835 (HRH33_04835)	coaE	1092722..1093348 (-)	627	WP_034111714.1	dephospho-CoA kinase	-
HRH33_RS04840 (HRH33_04840)	pilD	1093345..1094211 (-)	867	WP_167418610.1	A24 family peptidase	Machinery gene
HRH33_RS04845 (HRH33_04845)	pilC	1094208..1095416 (-)	1209	WP_167418609.1	type II secretion system F family protein	Machinery gene
HRH33_RS04850 (HRH33_04850)	-	1095620..1096033 (+)	414	WP_167418613.1	pilin	-
HRH33_RS04855 (HRH33_04855)	-	1096069..1097469 (+)	1401	WP_167418608.1	O-antigen ligase family protein	-
HRH33_RS04865 (HRH33_04865)	-	1097740..1098045 (+)	306	WP_034095837.1	DUF6388 family protein	-
HRH33_RS04870 (HRH33_04870)	nadC	1098115..1098963 (-)	849	WP_167418607.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31657.91 Da
• Isoelectric Point: 7.9668

>NTDB_id=451424 HRH33_RS04840 WP_167418610.1 1093345..1094211(-) (pilD) [Pseudomonas rhodesiae strain NL2019]
MILLLNESPWAFVALASVLGLIVGSFLNVLVWRLPKMLAREWRAQAHEVLGLPAEPVGPTYNLMRPNSCCPQCDHGISPW
ENIPLLSYLILKGRCAHCKARISLRYPFTELACGLLSAIVAWHFGVGWQAGTVLLLTWGLLAMSLIDADHQLLPDVLVLP
LMWLGLIVNSFALLVPLPDAVWGAVAGYMSLWSVFWLFKLITGKDGMGYGDFKLLALLGAWGGWQIVPMTLLMASLVGVF
AGLILMRVRKAQVSTPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFQ

Nucleotide

• Length: 867 bp

>NTDB_id=451424 HRH33_RS04840 WP_167418610.1 1093345..1094211(-) (pilD) [Pseudomonas rhodesiae strain NL2019]
TTGATCCTGCTGCTGAATGAATCCCCATGGGCCTTTGTCGCCCTGGCTTCGGTGCTGGGGCTGATCGTGGGCAGTTTCCT
CAATGTGCTGGTGTGGCGCCTGCCGAAGATGCTTGCACGGGAGTGGCGTGCCCAGGCCCATGAAGTACTTGGCTTACCGG
CCGAACCCGTCGGGCCGACCTACAACCTGATGCGCCCAAATTCCTGCTGCCCTCAGTGCGATCATGGGATCAGCCCCTGG
GAAAATATTCCGCTGCTCAGCTATTTGATCCTCAAGGGCCGCTGCGCTCACTGCAAGGCAAGGATCAGCCTGCGCTACCC
ATTCACCGAACTTGCCTGCGGATTGTTGTCGGCGATCGTGGCCTGGCACTTCGGCGTTGGTTGGCAAGCCGGGACAGTAT
TGCTGCTGACTTGGGGCTTGCTGGCGATGAGCCTGATCGACGCCGACCACCAATTACTGCCGGATGTGCTGGTGCTGCCG
CTTATGTGGCTGGGTCTGATCGTCAACAGCTTTGCACTGCTGGTGCCGTTGCCCGACGCCGTATGGGGAGCGGTGGCCGG
ATACATGAGCCTATGGTCGGTGTTCTGGCTGTTCAAGTTGATCACTGGCAAGGACGGCATGGGCTACGGCGACTTCAAAC
TCCTGGCCCTGCTCGGGGCCTGGGGCGGTTGGCAGATCGTGCCGATGACCCTCTTGATGGCGTCACTGGTTGGGGTATTT
GCCGGGTTGATACTGATGCGCGTGCGCAAGGCCCAGGTGTCCACGCCAATGCCATTTGGGCCCTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.65	98.264	0.517
pilD	Vibrio campbellii strain DS40M4	49.821	96.875	0.483
pilD	Neisseria gonorrhoeae MS11	51.331	91.319	0.469
pilD	Acinetobacter baumannii D1279779	46.52	94.792	0.441
pilD	Acinetobacter nosocomialis M2	46.52	94.792	0.441