Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   I6G27_RS07030 Genome accession   NZ_CP065751
Coordinates   1586719..1587576 (-) Length   285 a.a.
NCBI ID   WP_197931416.1    Uniprot ID   -
Organism   Moraxella osloensis strain FDAARGOS_870     
Function   assists with secretin assembly and localization (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1581719..1592576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G27_RS07010 (I6G27_07010) - 1582374..1583213 (-) 840 WP_062330683.1 tetratricopeptide repeat protein -
  I6G27_RS07015 (I6G27_07015) hisS 1583279..1584577 (-) 1299 WP_062330680.1 histidine--tRNA ligase -
  I6G27_RS07020 (I6G27_07020) ispG 1584625..1585740 (-) 1116 WP_062330678.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  I6G27_RS07025 (I6G27_07025) - 1585809..1586717 (-) 909 WP_062330675.1 RodZ domain-containing protein -
  I6G27_RS07030 (I6G27_07030) pilF 1586719..1587576 (-) 858 WP_197931416.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  I6G27_RS07035 (I6G27_07035) rlmN 1587887..1589086 (-) 1200 WP_062330669.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  I6G27_RS07040 (I6G27_07040) dusB 1589700..1590698 (+) 999 WP_062330663.1 tRNA dihydrouridine synthase DusB -
  I6G27_RS07045 (I6G27_07045) - 1590871..1591509 (+) 639 WP_062330660.1 peroxiredoxin -
  I6G27_RS07050 (I6G27_07050) - 1591691..1592527 (+) 837 WP_062330658.1 META domain-containing protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31226.66 Da        Isoelectric Point: 9.7580

>NTDB_id=451105 I6G27_RS07030 WP_197931416.1 1586719..1587576(-) (pilF) [Moraxella osloensis strain FDAARGOS_870]
MPSKSNFLSKVFAVGMIGFSSLTLCLTGCTTTQQVTTQTVTASDPSRWEKNPEEIARIRTAIAAEYIRGGKLDDAKRQLE
SALKSYPKSAEANDMMGVLLQQEGSPRNMQKAEAYFKNAIALNPDFSQANNNYGVYLAQLGRNQEAIAQFQIAGSALGYD
GRASALENLGRTALKVKNKPLAIQSFIKALDANRQSIVARTELIDILLADGKFLEAQALYNDLVKIIGQSNLDPRTLSQG
IRLAKLANNPLETQKLAQQLLDRYPLSDEAKQIRSGLLTPTSTWK

Nucleotide


Download         Length: 858 bp        

>NTDB_id=451105 I6G27_RS07030 WP_197931416.1 1586719..1587576(-) (pilF) [Moraxella osloensis strain FDAARGOS_870]
ATGCCCAGCAAATCAAATTTTTTATCGAAGGTTTTTGCGGTAGGTATGATTGGCTTTTCAAGCCTCACCCTTTGCTTAAC
CGGTTGTACCACTACCCAACAAGTCACCACGCAGACAGTCACCGCCAGTGACCCCAGTCGTTGGGAAAAAAATCCAGAAG
AAATCGCCAGGATTCGCACCGCGATTGCTGCTGAATATATTCGTGGTGGTAAATTAGACGATGCCAAACGACAGTTAGAA
AGTGCCTTAAAGTCTTATCCAAAGTCAGCAGAAGCCAATGATATGATGGGCGTGTTATTACAGCAAGAAGGCAGCCCGCG
CAATATGCAAAAAGCCGAAGCTTATTTTAAAAACGCCATTGCACTCAATCCTGACTTTAGTCAAGCAAACAACAATTATG
GCGTCTATCTCGCCCAACTCGGTCGTAACCAAGAAGCGATTGCCCAGTTTCAAATTGCGGGTTCTGCCTTGGGGTATGAC
GGTCGTGCCAGTGCGTTAGAGAATTTAGGTCGTACAGCGTTAAAGGTCAAAAACAAACCGCTGGCGATACAATCATTTAT
CAAAGCACTCGATGCCAATCGCCAAAGCATCGTCGCCCGTACAGAGCTCATTGATATTTTATTGGCCGATGGCAAATTTT
TGGAGGCGCAGGCGCTGTATAATGATTTGGTTAAAATTATTGGTCAATCTAACCTTGACCCGCGTACTTTATCGCAAGGG
ATTAGGCTTGCCAAACTTGCGAACAATCCCTTGGAAACACAAAAATTAGCGCAGCAGCTTTTGGATCGCTATCCACTTAG
CGATGAAGCAAAGCAGATTCGTTCTGGACTTTTAACCCCAACGTCAACTTGGAAATAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_16)

(63-94)

Tetratricopeptide repeat (TPR_16)

(108-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baylyi ADP1

42.748

91.93

0.393
  pilF Acinetobacter baumannii D1279779

42.264

92.982

0.393