Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HQN60_RS03810 Genome accession   NZ_CP054143
Coordinates   796014..797237 (+) Length   407 a.a.
NCBI ID   WP_173532422.1    Uniprot ID   A0A6M8SP29
Organism   Deefgea piscis strain D17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 791014..802237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN60_RS03790 (HQN60_03790) rpsP 791334..791576 (-) 243 WP_173532418.1 30S ribosomal protein S16 -
  HQN60_RS03795 (HQN60_03795) ffh 791774..793117 (-) 1344 WP_173532419.1 signal recognition particle protein -
  HQN60_RS03800 (HQN60_03800) - 793201..794010 (+) 810 WP_173532420.1 inner membrane protein YpjD -
  HQN60_RS03805 (HQN60_03805) pilB 794297..796000 (+) 1704 WP_173532421.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HQN60_RS03810 (HQN60_03810) pilC 796014..797237 (+) 1224 WP_173532422.1 type II secretion system F family protein Machinery gene
  HQN60_RS03815 (HQN60_03815) pilD 797230..798093 (+) 864 WP_308419425.1 A24 family peptidase Machinery gene
  HQN60_RS03820 (HQN60_03820) coaE 798094..798708 (+) 615 WP_173532423.1 dephospho-CoA kinase -
  HQN60_RS03825 (HQN60_03825) zapD 798727..799524 (+) 798 WP_254456673.1 cell division protein ZapD -
  HQN60_RS03830 (HQN60_03830) - 799521..799712 (+) 192 WP_173532424.1 DNA gyrase inhibitor YacG -
  HQN60_RS03835 (HQN60_03835) - 799795..800553 (+) 759 WP_173532425.1 GNAT family N-acetyltransferase -
  HQN60_RS03840 (HQN60_03840) - 800730..801470 (-) 741 WP_173532426.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44395.52 Da        Isoelectric Point: 9.9701

>NTDB_id=451105 HQN60_RS03810 WP_173532422.1 796014..797237(+) (pilC) [Deefgea piscis strain D17]
MAVQKKTIAVKEFNYHWKGKDRTGKAVSGEMRASGEAVVKTTLRRQGINIASVKKVRVPAGRKITELDIAMFTRQLATML
KSGVPLLTAFDIVAKGHGNPSVTKLLLDIKTDIETGSSLTQAFRKHPLQFDALYCNLVQAGEQAGILDALLARLATYKEK
ILGVKKKIKSAMFYPTAVIVAAFVITAVIMIFVIPAFKDLFSSFGADLPAPTLMVMAMSDFFVSYWFLIFGGIFGGFWLF
MNAWRRSEAMQIFMDRLILKLPIFGEIVKNATIARWTRTLATMFAAGVPLVESLESVGGAAGNYIYKIATKKIQSEVSTG
TSLTVAMQNANVFPNMVMQMTSIGEESGSLDAMLSKVADYYEEEVDNAVEALSSLMEPIIMVVLGTLIGGLVVAMYLPIF
KMGAAVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=451105 HQN60_RS03810 WP_173532422.1 796014..797237(+) (pilC) [Deefgea piscis strain D17]
ATGGCAGTCCAAAAAAAAACAATAGCGGTCAAAGAATTTAATTATCACTGGAAAGGCAAAGATCGCACCGGCAAGGCAGT
TAGCGGTGAAATGCGTGCCAGCGGCGAAGCCGTTGTCAAAACCACTTTACGTCGCCAAGGCATCAATATTGCTTCGGTTA
AAAAAGTTCGTGTTCCTGCGGGCCGGAAAATCACTGAACTTGATATTGCGATGTTTACGCGGCAATTGGCGACCATGCTC
AAATCTGGCGTTCCACTACTCACCGCGTTTGATATCGTCGCCAAAGGCCATGGAAACCCTTCAGTCACCAAGTTATTACT
TGATATCAAAACAGATATCGAGACGGGCTCTTCACTCACACAAGCGTTTCGTAAGCATCCGCTGCAATTTGATGCACTGT
ATTGCAATTTAGTGCAAGCCGGTGAGCAGGCTGGTATTTTGGATGCATTACTCGCTCGACTTGCGACTTACAAAGAAAAA
ATCCTTGGCGTTAAGAAAAAAATCAAATCAGCGATGTTTTATCCTACCGCTGTGATTGTTGCAGCATTTGTGATTACCGC
AGTCATTATGATTTTTGTTATTCCAGCATTTAAAGATTTATTCTCAAGTTTTGGTGCCGACTTACCAGCCCCGACATTGA
TGGTAATGGCAATGTCTGATTTTTTTGTTTCGTACTGGTTCCTCATCTTTGGCGGTATCTTTGGTGGCTTCTGGCTATTT
ATGAACGCTTGGCGCCGTTCAGAAGCGATGCAAATTTTTATGGATCGATTGATTCTTAAGCTGCCAATTTTTGGCGAAAT
CGTCAAAAATGCCACCATTGCCCGCTGGACTCGAACCCTAGCCACCATGTTTGCCGCTGGGGTACCACTGGTTGAATCTC
TTGAATCCGTTGGCGGAGCAGCAGGCAACTATATCTACAAAATTGCAACGAAAAAAATTCAGTCTGAAGTGAGCACCGGC
ACTAGTTTGACGGTTGCAATGCAAAATGCGAATGTGTTTCCCAATATGGTGATGCAAATGACCTCGATTGGCGAAGAATC
AGGCTCGCTCGATGCCATGCTCAGCAAAGTCGCAGATTATTACGAGGAAGAAGTCGACAATGCTGTTGAAGCATTATCCA
GCTTAATGGAGCCGATCATTATGGTGGTGCTCGGTACTTTGATCGGTGGCTTAGTGGTGGCAATGTATCTGCCTATTTTC
AAAATGGGTGCGGCTGTTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M8SP29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.271

97.789

0.531
  pilC Acinetobacter baylyi ADP1

51.106

100

0.511
  pilC Acinetobacter baumannii D1279779

51.889

97.543

0.506
  pilC Pseudomonas stutzeri DSM 10701

51.122

98.526

0.504
  pilG Neisseria gonorrhoeae MS11

51.128

98.034

0.501
  pilG Neisseria meningitidis 44/76-A

50.877

98.034

0.499
  pilC Vibrio campbellii strain DS40M4

39.036

100

0.398
  pilC Vibrio cholerae strain A1552

40.452

97.789

0.396