NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	HQN60_RS03815	Genome accession	NZ_CP054143
Coordinates	797230..798093 (+)	Length	287 a.a.
NCBI ID	WP_308419425.1	Uniprot ID	-
Organism	Deefgea piscis strain D17
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 792230..803093

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQN60_RS03800 (HQN60_03800)	-	793201..794010 (+)	810	WP_173532420.1	inner membrane protein YpjD	-
HQN60_RS03805 (HQN60_03805)	pilB	794297..796000 (+)	1704	WP_173532421.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HQN60_RS03810 (HQN60_03810)	pilC	796014..797237 (+)	1224	WP_173532422.1	type II secretion system F family protein	Machinery gene
HQN60_RS03815 (HQN60_03815)	pilD	797230..798093 (+)	864	WP_308419425.1	A24 family peptidase	Machinery gene
HQN60_RS03820 (HQN60_03820)	coaE	798094..798708 (+)	615	WP_173532423.1	dephospho-CoA kinase	-
HQN60_RS03825 (HQN60_03825)	zapD	798727..799524 (+)	798	WP_254456673.1	cell division protein ZapD	-
HQN60_RS03830 (HQN60_03830)	-	799521..799712 (+)	192	WP_173532424.1	DNA gyrase inhibitor YacG	-
HQN60_RS03835 (HQN60_03835)	-	799795..800553 (+)	759	WP_173532425.1	GNAT family N-acetyltransferase	-
HQN60_RS03840 (HQN60_03840)	-	800730..801470 (-)	741	WP_173532426.1	symmetrical bis(5'-nucleosyl)-tetraphosphatase	-
HQN60_RS03845 (HQN60_03845)	-	801500..802384 (+)	885	WP_173532427.1	HDOD domain-containing protein	-
HQN60_RS03850 (HQN60_03850)	rplQ	802441..802830 (-)	390	WP_173532428.1	50S ribosomal protein L17	-

Sequence

Protein

Download Length: 287 a.a. Molecular weight: 31506.73 Da Isoelectric Point: 7.2374

                                >NTDB_id=451106 HQN60_RS03815 WP_308419425.1 797230..798093(+) (pilD) [Deefgea piscis strain D17]

MVNFMNSSIEISMFIFAIAVLGLLVGSFLNVVIHRLPLMMEREFKQECAVLLDEPTPTPAAKYNLVVPRSACPQCGHQIT

ALENIPILSWLLLRGQCAHCKNKISARYPLVELMTALISGGLAWHFGYSAPLIGALILAWFLITLIMIDADTYLLPDSLT

LPLIWIGLIFNSFNVFTSLESAVYGAIAGYMSLWLVYWAFKLITGKEGMGYGDFKLLAALGAWFGWSMIPMIILLSSFAG

AATGIVMVLGQNRGWNKPMPFGPYLGVAGLLALIWGKDLSLMLYGMA

Nucleotide

Download Length: 864 bp

                                >NTDB_id=451106 HQN60_RS03815 WP_308419425.1 797230..798093(+) (pilD) [Deefgea piscis strain D17]

TTGGTTAATTTTATGAATTCTTCAATTGAAATTTCTATGTTTATTTTTGCTATTGCTGTATTAGGTTTATTAGTCGGTAG

TTTTTTAAATGTCGTCATTCATCGCCTACCGCTGATGATGGAAAGAGAGTTTAAACAAGAATGTGCTGTACTTCTCGACG

AACCCACACCAACACCCGCAGCTAAATATAATTTAGTCGTTCCGCGTTCAGCTTGTCCTCAATGTGGGCATCAAATAACT

GCACTCGAGAACATTCCAATTCTGAGTTGGCTACTGCTACGTGGGCAATGTGCTCATTGCAAAAACAAAATCAGTGCACG

CTACCCACTCGTAGAATTAATGACTGCTTTGATATCAGGCGGGCTGGCTTGGCACTTTGGCTATAGCGCTCCGCTGATTG

GCGCTCTAATTCTGGCATGGTTTTTAATCACATTAATCATGATTGATGCCGATACTTACCTACTGCCCGATAGTTTGACA

TTGCCATTGATTTGGATTGGATTAATTTTCAATAGCTTTAATGTCTTTACCTCACTAGAAAGTGCGGTATATGGCGCAAT

CGCAGGGTATATGTCTCTTTGGCTCGTATACTGGGCATTTAAGTTAATCACCGGCAAAGAGGGTATGGGCTACGGCGATT

TTAAATTACTTGCCGCGCTGGGTGCTTGGTTTGGCTGGAGCATGATCCCAATGATTATTCTATTATCTTCGTTTGCTGGA

GCAGCAACCGGCATTGTGATGGTTTTAGGTCAAAACCGAGGATGGAATAAGCCCATGCCATTTGGACCTTATCTCGGCGT

TGCCGGCTTACTGGCTTTAATTTGGGGCAAAGATCTATCGCTCATGTTGTATGGAATGGCATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(136-245)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	54.924	91.986	0.505
pilD	Vibrio campbellii strain DS40M4	52.788	93.728	0.495
pilD	Neisseria gonorrhoeae MS11	55.159	87.805	0.484
pilD	Acinetobacter nosocomialis M2	50.758	91.986	0.467
pilD	Acinetobacter baumannii D1279779	50.379	91.986	0.463

Detailed information NTG0451106