Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HRJ47_RS17990 Genome accession   NZ_CP054137
Coordinates   3698240..3699652 (+) Length   470 a.a.
NCBI ID   WP_086398701.1    Uniprot ID   -
Organism   Acinetobacter pittii strain JXA13     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3693240..3704652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRJ47_RS17970 (HRJ47_17960) thrC 3693497..3694636 (+) 1140 WP_203079968.1 threonine synthase -
  HRJ47_RS17975 (HRJ47_17965) pbpG 3694743..3695789 (-) 1047 WP_005065720.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  HRJ47_RS17980 (HRJ47_17970) gacA 3696002..3696637 (+) 636 WP_002121174.1 response regulator -
  HRJ47_RS17985 (HRJ47_17975) pilS 3696648..3698216 (+) 1569 WP_198912078.1 sensor histidine kinase Regulator
  HRJ47_RS17990 (HRJ47_17980) pilR 3698240..3699652 (+) 1413 WP_086398701.1 sigma-54-dependent transcriptional regulator Regulator
  HRJ47_RS17995 (HRJ47_17985) ctpA 3699656..3700840 (-) 1185 WP_002121269.1 S41 family peptidase -
  HRJ47_RS18000 (HRJ47_17990) gpmI 3700856..3702403 (-) 1548 WP_075384045.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  HRJ47_RS18005 (HRJ47_17995) lptG 3702530..3703600 (-) 1071 WP_002121203.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52652.72 Da        Isoelectric Point: 6.3452

>NTDB_id=451063 HRJ47_RS17990 WP_086398701.1 3698240..3699652(+) (pilR) [Acinetobacter pittii strain JXA13]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVQHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGEITLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIQKVCTEWGISSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDDESIDLTHLAPPLRGSSVSPQIVTKQLN
QTPTVQTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=451063 HRJ47_RS17990 WP_086398701.1 3698240..3699652(+) (pilR) [Acinetobacter pittii strain JXA13]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAGCTCTTTACTCAGTTTCATTACGATGCATGCT
TGACCGATTTAAATCTACCTGACGGTAGTGGCTTAGAATTGGTTCAACATGTTTCTCAAACTTACCCACACACACCCATT
GCAGTCTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCGGGAGCTTTTGATTTTGTCAGCAAACC
GATTAACCAAATTCATTTAGATCAGTTGTTAAAAAAAGCGCTTAACCAGCCAAAACCAGAGCATGAGTTTGGTGAAATAA
CTCTAGAGAATGACTTATTAATTGGGCGTTCACCACCTATACAAAACTTGCGGACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCTCCTGTATTTGTTACAGGTGAGTCTGGTACGGGCAAAGAAGTTGTTGCGAATCTTATTCACCGCTTAAGCAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGTGGAGCAATCCCGACTGAACTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGGAGCTTTACTGGAGCGACTCAAGACAAACAAGGTCTGATTTTATCAGCTCATGGAGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAAGTTAAATTGCTTCGCGCAGTACAAGAGAAAAAGATTCGCCCAGTAGGTTCAGA
TCAGGAAATTGATGTCGATTTTCGAGTAATCAGTGCGAGTCACCAAGACTTAGATTTATTAGTCCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATGTTGCCGCCACTACGTGACCGTGGTGGAGATATTTTGCTA
TTGGCCAATCATTTTATTCAAAAGGTTTGTACGGAATGGGGAATTTCAAGCAAGCAATTAACGGCGAGCGCTGAAACTTA
CTTATTGCAGCAAGACTTTCCGGGTAATGTTCGTGAATTAAGAAATATGATTGAACGAGCTATTACTTTAAGTGATGATG
AGTCCATTGATTTAACACACTTAGCACCTCCTCTTAGAGGCAGTAGTGTGAGCCCGCAAATCGTAACGAAACAACTAAAT
CAAACACCGACTGTTCAGACTCACCCAAAATTTCCAATGGAAGGTTTAGAACGCTACTTAGAAAATATCGAAAAAGATAT
TTTACTGAATGCTCTGAACATGACGCATTGGAATCGAACTTTAGCGGCTAAAAAGTTAGGAATGACATTCCGTTCTTTAC
GCTATCGATTAAAAAAGTTTGGCTTAGATACTGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

85.835

100

0.864
  pilR Pseudomonas aeruginosa PAK

51.096

97.021

0.496