Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HRJ47_RS17985 Genome accession   NZ_CP054137
Coordinates   3696648..3698216 (+) Length   522 a.a.
NCBI ID   WP_198912078.1    Uniprot ID   -
Organism   Acinetobacter pittii strain JXA13     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3691648..3703216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRJ47_RS17965 (HRJ47_17955) hom 3692141..3693442 (+) 1302 WP_002121263.1 homoserine dehydrogenase -
  HRJ47_RS17970 (HRJ47_17960) thrC 3693497..3694636 (+) 1140 WP_203079968.1 threonine synthase -
  HRJ47_RS17975 (HRJ47_17965) pbpG 3694743..3695789 (-) 1047 WP_005065720.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  HRJ47_RS17980 (HRJ47_17970) gacA 3696002..3696637 (+) 636 WP_002121174.1 response regulator -
  HRJ47_RS17985 (HRJ47_17975) pilS 3696648..3698216 (+) 1569 WP_198912078.1 sensor histidine kinase Regulator
  HRJ47_RS17990 (HRJ47_17980) pilR 3698240..3699652 (+) 1413 WP_086398701.1 sigma-54-dependent transcriptional regulator Regulator
  HRJ47_RS17995 (HRJ47_17985) ctpA 3699656..3700840 (-) 1185 WP_002121269.1 S41 family peptidase -
  HRJ47_RS18000 (HRJ47_17990) gpmI 3700856..3702403 (-) 1548 WP_075384045.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59194.79 Da        Isoelectric Point: 6.4280

>NTDB_id=451062 HRJ47_RS17985 WP_198912078.1 3696648..3698216(+) (pilS) [Acinetobacter pittii strain JXA13]
MQFPVNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPTLYSYTLLGYSLLSLLQLLCFKFIATQATRQ
LILFFIVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAIIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDSEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIKLNDFIKTLLDEDLSDIK
HEIQLKISDSSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=451062 HRJ47_RS17985 WP_198912078.1 3696648..3698216(+) (pilS) [Acinetobacter pittii strain JXA13]
ATGCAATTTCCCGTAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGTCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCACTTTATATTCTT
ACACACTACTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGCTTTAAGTTTATTGCTACTCAGGCAACTAGGCAG
CTCATTTTATTTTTTATAGTTGATATTATCTGTCTGAGTTTACTGACATTTTCAGTAGGCGAACCCAATCTTCAACTCAG
CTTGCTCTATGTGATTGCCATATTTACTTCGGCCATTTTACTTAGCGCAAGAATGTCGTTGCTCATTACATTACTTGCAG
TCATTGCCATTATTTATCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCCTTA
TTGGCCTTCTTGTTTTTTGTAGTACATGGAATCGGACAAATTGCGGTCCAACGCTTTAAATTACTTGAAGCGCTAACTTT
CCATCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATTTTGGAACAAATTGAAGAGGGCTATTTAGTTC
TAGATGAAAACTACGACATTGTTTTAAGTAACCCAGCCGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATAACCTAAAAGAAGGTGATCGATTTAT
TTTTGAGTCCCGACTGTCGGCTTATTCCATTAATATTAAAGTGCAACATCTTTTGGTGCCACAGCAAGCATTAACACTAC
TCATCTTACAAGATGCGCAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCTGCTTTAGGACAACTCTCAGCAAGT
ATTGCCCATGAGATCCGTAACCCTCTTGCAGCCATTGTTCAAGCAAATGAATTGCTCAAAGATAGTGATTCAGAACAGCA
AAACACTTTGCGCAATATGATTGGTAAGCAAACGAAACGCATTGATAGTATTGTTCAAGACACCTTAGGACTTGCCCGCA
GTGAAAGAACATACCCCATCCAGATTAAACTAAACGACTTCATAAAAACGTTATTAGATGAAGATTTATCTGATATTAAA
CATGAGATCCAGCTTAAAATTTCCGATTCATCTTTAAAACTCTTATTCGATGAAAAGCAACTCAGACAAGTGCTAATTAA
CCTTGTTAGGAATGCTCTACGGCACAATGCTCCCGATTCGCCCTATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

PAS fold (PAS)

(203-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.828

100

0.948