Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FOC71_RS01315 Genome accession   NZ_CP053999
Coordinates   246851..248119 (-) Length   422 a.a.
NCBI ID   WP_003075285.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 241851..253119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS01285 (FOC71_01285) - 242584..242889 (-) 306 WP_003075274.1 DUF1292 domain-containing protein -
  FOC71_RS01290 (FOC71_01290) ruvX 242907..243326 (-) 420 WP_003075276.1 Holliday junction resolvase RuvX -
  FOC71_RS01295 (FOC71_01295) - 243326..243592 (-) 267 WP_009569646.1 IreB family regulatory phosphoprotein -
  FOC71_RS01300 (FOC71_01300) - 243898..244455 (-) 558 WP_003075278.1 SP0191 family lipoprotein -
  FOC71_RS09895 - 244957..245091 (-) 135 WP_003075282.1 hypothetical protein -
  FOC71_RS01305 (FOC71_01305) spx 245173..245571 (-) 399 WP_003026638.1 transcriptional regulator Spx -
  FOC71_RS01310 (FOC71_01310) recA 245657..246802 (-) 1146 WP_003077215.1 recombinase RecA Machinery gene
  FOC71_RS01315 (FOC71_01315) cinA 246851..248119 (-) 1269 WP_003075285.1 competence/damage-inducible protein A Machinery gene
  FOC71_RS01320 (FOC71_01320) - 248412..252326 (-) 3915 WP_003075287.1 Cna B-type domain-containing protein -
  FOC71_RS01325 (FOC71_01325) - 252685..253027 (+) 343 Protein_248 transposase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45608.14 Da        Isoelectric Point: 5.8217

>NTDB_id=449991 FOC71_RS01315 WP_003075285.1 246851..248119(-) (cinA) [Streptococcus intermedius strain FDAARGOS_769]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLASLGVDVYFQTVVGDNEDRLLSILEIARDRSNLVILTGGLGPTEDDLTKQT
LSKFLNRRLVFYQVAVEKLNRFFSSRPDYTRTPNNERQAQIVEGSTPLPNATGLAVGGLLEADGVTYVVLPGPPSELKPM
VNNELVPLLATGQKLYSRVLRFFGIGESQLVTLLGNLIDTQTDPTIAPYAKTGEVTLRLSTKASSQKEADVKFAHLEKKI
LAVQTFEKQQLADLFYAYGDDNSLGQTAFELLKKAGKTVTAAESLTAGLFQATLANFSGASKVFGGGFVTYSIEEKSQML
GIPLADLEMHGVVSAYTAEKMATQARKLTASDYAVSLTGVAGPDSLEGHPAGTVYIGLATADNVQSIQVNIAERSRTDVR
KIAVLHAFNLLRKTLLKNENML

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=449991 FOC71_RS01315 WP_003075285.1 246851..248119(-) (cinA) [Streptococcus intermedius strain FDAARGOS_769]
ATGAAAGCAGAAATTATTGCTGTGGGTACTGAGATTTTGACTGGTCAGATTGTCAATACGAATGCTCAATTTTTATCTGA
AAAATTAGCGAGCTTGGGAGTAGATGTCTATTTCCAGACAGTGGTTGGAGATAATGAAGATCGTCTGTTATCCATTTTAG
AAATAGCTAGAGATCGTAGTAATTTAGTTATCTTGACAGGTGGTTTAGGTCCGACTGAAGACGACTTAACCAAGCAGACT
TTGTCAAAATTTTTGAATCGTAGGCTAGTCTTTTATCAAGTAGCTGTTGAAAAATTGAATCGTTTCTTCTCCAGCCGACC
GGACTATACTCGAACACCAAATAATGAGCGACAAGCTCAGATAGTAGAAGGCTCGACTCCTTTACCAAATGCGACTGGCT
TAGCTGTCGGAGGATTGTTAGAAGCAGACGGAGTGACCTATGTAGTCCTGCCTGGCCCCCCTAGTGAACTAAAGCCTATG
GTAAACAATGAGTTGGTTCCGCTTTTAGCAACTGGCCAAAAATTGTATTCGAGAGTCTTGCGTTTCTTTGGTATTGGGGA
GAGTCAATTAGTCACCCTTTTAGGAAACTTGATTGATACTCAGACGGATCCGACCATTGCTCCTTATGCTAAAACGGGAG
AAGTGACGTTGCGATTGTCGACCAAGGCCAGCAGTCAAAAGGAAGCAGATGTTAAGTTTGCTCATCTGGAAAAGAAAATT
TTAGCAGTACAGACTTTTGAGAAACAACAATTAGCCGACCTTTTCTATGCTTATGGAGATGATAATTCTCTGGGACAGAC
AGCTTTTGAATTGTTGAAGAAAGCAGGCAAAACAGTCACAGCAGCTGAAAGTCTGACTGCGGGACTTTTTCAAGCGACTT
TAGCAAATTTTTCTGGAGCATCCAAGGTCTTTGGAGGTGGCTTTGTTACTTATAGCATAGAGGAGAAGAGTCAAATGTTA
GGCATTCCATTGGCAGATTTAGAAATGCATGGGGTAGTCTCAGCTTATACAGCAGAGAAAATGGCTACGCAAGCTAGGAA
ATTGACTGCTAGTGACTATGCGGTGAGTTTGACTGGAGTAGCAGGTCCAGATAGTTTAGAAGGCCATCCAGCAGGAACTG
TTTATATTGGCTTGGCAACTGCAGATAACGTTCAGTCTATTCAGGTTAATATTGCGGAGCGCAGTCGGACGGATGTACGT
AAAATAGCTGTGTTACATGCTTTCAATTTGTTGCGAAAAACTTTATTAAAAAATGAGAATATGCTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-240)

Competence-damaged protein (CinA)

(263-415)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

75.12

99.052

0.744
  cinA Streptococcus pneumoniae TIGR4

73.684

99.052

0.73
  cinA Streptococcus mitis NCTC 12261

73.684

99.052

0.73
  cinA Streptococcus pneumoniae Rx1

73.445

99.052

0.727
  cinA Streptococcus pneumoniae R6

73.445

99.052

0.727
  cinA Streptococcus pneumoniae D39

73.206

99.052

0.725
  cinA Streptococcus mutans UA159

71.631

100

0.718
  cinA Streptococcus suis isolate S10

53.846

98.578

0.531
  cinA Bacillus subtilis subsp. subtilis str. 168

46.172

99.052

0.457