Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   FOC71_RS00730 Genome accession   NZ_CP053999
Coordinates   142776..143174 (-) Length   132 a.a.
NCBI ID   WP_260469249.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 137776..148174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS00705 (FOC71_00705) - 139493..140692 (-) 1200 WP_003073996.1 acetate kinase -
  FOC71_RS00710 (FOC71_00710) comYH 140739..141692 (-) 954 WP_003073994.1 class I SAM-dependent methyltransferase Machinery gene
  FOC71_RS00715 (FOC71_00715) comGG 141783..142109 (-) 327 WP_268928556.1 competence type IV pilus minor pilin ComGG -
  FOC71_RS00720 (FOC71_00720) comGF/cglF 142090..142527 (-) 438 WP_003073990.1 competence type IV pilus minor pilin ComGF Machinery gene
  FOC71_RS00725 (FOC71_00725) comGE/cglE 142511..142804 (-) 294 WP_003073987.1 competence type IV pilus minor pilin ComGE Machinery gene
  FOC71_RS00730 (FOC71_00730) comYD 142776..143174 (-) 399 WP_260469249.1 competence type IV pilus minor pilin ComGD Machinery gene
  FOC71_RS00735 (FOC71_00735) comYC 143164..143481 (-) 318 WP_003073983.1 competence type IV pilus major pilin ComGC Machinery gene
  FOC71_RS00740 (FOC71_00740) comYB 143478..144500 (-) 1023 WP_172851983.1 competence type IV pilus assembly protein ComGB Machinery gene
  FOC71_RS00745 (FOC71_00745) comYA 144442..145383 (-) 942 WP_003073980.1 competence type IV pilus ATPase ComGA Machinery gene
  FOC71_RS00750 (FOC71_00750) - 145452..145817 (-) 366 WP_003073978.1 DUF1033 family protein -
  FOC71_RS00755 (FOC71_00755) glnA 146005..147351 (-) 1347 WP_003073975.1 type I glutamate--ammonia ligase -
  FOC71_RS00760 (FOC71_00760) - 147390..147749 (-) 360 WP_003073972.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15026.23 Da        Isoelectric Point: 10.0309

>NTDB_id=449984 FOC71_RS00730 WP_260469249.1 142776..143174(-) (comYD) [Streptococcus intermedius strain FDAARGOS_769]
MQIKGFTILESLLTLFVASFLLLAVSGAVRSSFEQVEEQIFFLEFEHFYRESQKLSNATQRQLDMNFSRARISNGYNSLS
VPRSVHAPDDLTLRFDKAGGNSSLGKIVFQTKRQTITYQLYLGNGKFKKTIC

Nucleotide


Download         Length: 399 bp        

>NTDB_id=449984 FOC71_RS00730 WP_260469249.1 142776..143174(-) (comYD) [Streptococcus intermedius strain FDAARGOS_769]
TTGCAGATTAAGGGATTTACAATTTTGGAAAGTTTGCTGACTTTGTTTGTAGCGAGTTTTTTATTACTTGCTGTTTCAGG
GGCTGTCCGTTCCTCTTTTGAACAAGTGGAAGAGCAGATTTTCTTTCTTGAGTTTGAGCATTTTTACCGAGAAAGTCAGA
AGTTGAGTAATGCTACTCAAAGGCAATTGGACATGAATTTTTCTCGTGCGCGAATTTCTAATGGGTACAATTCTTTATCA
GTTCCTCGCTCGGTTCACGCTCCAGATGATTTAACACTTCGTTTTGATAAGGCAGGTGGTAATTCCTCGCTTGGTAAGAT
TGTATTTCAGACGAAAAGACAGACAATTACGTATCAATTATATCTAGGAAATGGAAAATTTAAGAAAACAATATGTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus gordonii str. Challis substr. CH1

59.231

98.485

0.583
  comGD/cglD Streptococcus mitis NCTC 12261

55.039

97.727

0.538
  comGD/cglD Streptococcus mitis SK321

55.118

96.212

0.53
  comGD/cglD Streptococcus pneumoniae Rx1

55.118

96.212

0.53
  comGD/cglD Streptococcus pneumoniae D39

55.118

96.212

0.53
  comGD/cglD Streptococcus pneumoniae R6

55.118

96.212

0.53
  comGD/cglD Streptococcus pneumoniae TIGR4

54.331

96.212

0.523
  comYD Streptococcus mutans UA140

49.231

98.485

0.485
  comYD Streptococcus mutans UA159

49.231

98.485

0.485