Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   G4D73_RS10905 Genome accession   NZ_CP053947
Coordinates   2345617..2346846 (-) Length   409 a.a.
NCBI ID   WP_213686755.1    Uniprot ID   -
Organism   Acinetobacter sp. WY4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2340617..2351846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4D73_RS10880 - 2341997..2342320 (+) 324 WP_004281089.1 pyrimidine/purine nucleoside phosphorylase -
  G4D73_RS10885 rlmB 2342455..2343204 (+) 750 WP_005101440.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  G4D73_RS10890 - 2343211..2344134 (+) 924 WP_416232271.1 DMT family transporter -
  G4D73_RS10895 coaE 2344156..2344755 (-) 600 WP_213686753.1 dephospho-CoA kinase -
  G4D73_RS15630 pilD 2344757..2345617 (-) 861 WP_213686754.1 prepilin peptidase Machinery gene
  G4D73_RS10905 pilC 2345617..2346846 (-) 1230 WP_213686755.1 type II secretion system F family protein Machinery gene
  G4D73_RS10910 pilB 2346878..2348587 (-) 1710 WP_213686756.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G4D73_RS10915 tpiA 2348865..2349656 (+) 792 WP_213686757.1 triose-phosphate isomerase -
  G4D73_RS10920 secG 2349670..2349999 (+) 330 WP_148334344.1 preprotein translocase subunit SecG -
  G4D73_RS10950 rimP 2351066..2351590 (+) 525 WP_213686758.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44870.32 Da        Isoelectric Point: 9.8660

>NTDB_id=449307 G4D73_RS10905 WP_213686755.1 2345617..2346846(-) (pilC) [Acinetobacter sp. WY4]
MAAVKKGQMMPIFSYEGIDRKGAKIKGELPAKNMALAKVTLRKQGISIKTIREKKKNILEGLMKKKVSTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPATVVVVALIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSDWMQKYWFLLIIAIGAVI
TAFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEDAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=449307 G4D73_RS10905 WP_213686755.1 2345617..2346846(-) (pilC) [Acinetobacter sp. WY4]
ATGGCAGCAGTAAAGAAAGGCCAGATGATGCCGATCTTCAGCTATGAAGGAATTGATCGTAAAGGGGCAAAGATCAAGGG
AGAATTGCCAGCAAAAAATATGGCTTTGGCCAAGGTCACCCTTCGAAAACAAGGTATCAGCATCAAGACCATTCGGGAAA
AGAAAAAAAATATCCTTGAAGGCTTGATGAAGAAAAAAGTCTCAACACTGGATATTACAATTTTTACCCGACAGTTGGCG
ACCATGATGAAAGCCGGGGTACCACTGGTACAAGGCTTTGAGATTGTCGCAGAAGGTCTGGAAAATCCATCCATGCGTGA
AGTTGTATTGGGAATTAAAGGTGAAGTCGAGGGGGGTAACACTTTCGCTGGAGCACTGCGTAAATATCCACAGTATTTTG
ATAATTTATTTTGCTCTTTAGTTGAATCAGGCGAGCAGTCGGGTGCTCTTGAAACCATGCTTGATCGTGTTGCGATTTAC
AAAGAAAAAAGTGAATTGCTCAAGCAAAAAATCAAAAAGGCCATGAAATATCCAGCTACAGTTGTTGTGGTCGCTCTGAT
TGTTACCATTATCTTGATGGTCAAAGTGGTCCCGGTTTTCCAGGATTTATTCTCTTCATTTGGCGCCGACCTGCCCGCTT
TTACCAAGATGGTGGTCAATATGTCGGACTGGATGCAAAAATATTGGTTCCTGCTGATTATCGCCATTGGGGCCGTGATT
ACCGCTTTTCTTGAAGCGAAAAAACGCAGCAAGAAATTCCGCGATTTTCTGGATAAGGCCGCACTCAAAGCCCCGATTTT
TGGTGACCTGGTGTATAAAGCGATTATTGCACGTTATAGCCGTACCCTTGCCACGACTTTCGCAGCAGGTGTACCTTTGA
TTGATGCACTGGAATCCACTGCCGGCGCTACCAATAACGTTGTATATGAAGATGCTGTGATGAAAATTCGTGAAGATGTC
GCCACAGGTCAACAACTACAGTTTGCCATGCGCGTGACCAACAAATTCCCATCCATGGCAGTCCAAATGGTTGCAATTGG
TGAAGAATCCGGTGCATTAGATGCCATGCTGGATAAAGTAGCAACACATTATGAAAACGAAGTTGATAATGCGGTTGACG
GCTTAACTTCGATGATGGAACCGCTAATTATGGCCGTTCTCGGTGTGCTCGTTGGTGGTCTGGTGATTGCCATGTACCTT
CCAATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

90.418

99.511

0.9
  pilC Acinetobacter baylyi ADP1

83.292

99.511

0.829
  pilC Pseudomonas stutzeri DSM 10701

62.06

97.311

0.604
  pilC Legionella pneumophila strain ERS1305867

53.652

97.066

0.521
  pilG Neisseria gonorrhoeae MS11

46.734

97.311

0.455
  pilG Neisseria meningitidis 44/76-A

46.734

97.311

0.455
  pilC Vibrio cholerae strain A1552

43.627

99.756

0.435
  pilC Vibrio campbellii strain DS40M4

41.814

97.066

0.406