Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   STAVA116_RS00215 Genome accession   NZ_CP065498
Coordinates   30368..31141 (+) Length   257 a.a.
NCBI ID   WP_002946256.1    Uniprot ID   Q5M6K1
Organism   Streptococcus thermophilus strain AVA116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 25368..36141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA116_RS00195 (STAVA116_00195) - 25520..26920 (+) 1401 WP_207567724.1 CHAP domain-containing protein -
  STAVA116_RS00200 (STAVA116_00200) - 27134..28099 (+) 966 WP_002948994.1 ribose-phosphate diphosphokinase -
  STAVA116_RS00205 (STAVA116_00205) - 28148..28994 (-) 847 Protein_19 transposase -
  STAVA116_RS00210 (STAVA116_00210) - 29206..30381 (+) 1176 WP_011680586.1 pyridoxal phosphate-dependent aminotransferase -
  STAVA116_RS00215 (STAVA116_00215) recO 30368..31141 (+) 774 WP_002946256.1 DNA repair protein RecO Machinery gene
  STAVA116_RS00220 (STAVA116_00220) plsX 31357..32361 (+) 1005 WP_011680588.1 phosphate acyltransferase PlsX -
  STAVA116_RS00225 (STAVA116_00225) - 32361..32606 (+) 246 WP_002949008.1 phosphopantetheine-binding protein -
  STAVA116_RS00230 (STAVA116_00230) purC 32891..33598 (+) 708 WP_011226729.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29830.05 Da        Isoelectric Point: 5.0766

>NTDB_id=449308 STAVA116_RS00215 WP_002946256.1 30368..31141(+) (recO) [Streptococcus thermophilus strain AVA116]
MQKLESRGFILFNRNYRENDKLVKIFTKQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVVDAQLFAFLEKTLVLMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYEEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDEMKRKLRQFIDELYDNYVGIHLKSKKFI
DNLNSWGHIMSKEDNAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=449308 STAVA116_RS00215 WP_002946256.1 30368..31141(+) (recO) [Streptococcus thermophilus strain AVA116]
ATGCAGAAGCTTGAGAGTAGGGGGTTTATCCTCTTCAATCGTAATTATCGTGAGAATGATAAGCTGGTTAAGATTTTTAC
TAAACAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTGAGTGCTGTGATTCAACCTTTAAACA
TCGCTGAATTTATGATGACTGTAAATGATGAAGGTTTATCTTTCATAGAGGATTATAGTCAGGCAGAGTCTTTTAAGGAA
ATTACAAGTGATATTTTTAAACTGTCTTACGCGACCTATTTAGCTGCCTTGACTGATGCTGCTATTGCTGACGGTGTGGT
AGATGCACAATTATTTGCATTTTTAGAGAAAACCCTTGTGTTAATGGAAGAGGGCTTAGATTATGAAATATTGACTAATA
TCTTTGAGATTCAAGTTTTGGACCGTTTTGGCGTACGATTGAATTTTCATGAATGTGTCTTTTGTCATCGTGTTGGTCTT
CCTTTTGATTTCTCGTATAAGTTCTCAGGTTTACTTTGTCCCAATCATTACGAAGAAGATGAAAGGCGTAGTCATTTGGA
CCCTAATGTGCCTTATCTTTTGGATCGTTTCCAGGGTCTTTCATTTGAAGAATTGAGAAGCATATCTGTTAAGGATGAAA
TGAAACGAAAGTTGAGACAATTTATTGATGAGCTTTATGATAATTATGTTGGGATTCATCTTAAAAGCAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAGTAAAGAAGATAATGCTGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6K1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.66

98.444

0.607