Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   G4D73_RS15630 Genome accession   NZ_CP053947
Coordinates   2344757..2345617 (-) Length   286 a.a.
NCBI ID   WP_213686754.1    Uniprot ID   -
Organism   Acinetobacter sp. WY4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2339757..2350617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4D73_RS10875 recN 2339894..2341555 (-) 1662 WP_213686751.1 DNA repair protein RecN -
  G4D73_RS10880 - 2341997..2342320 (+) 324 WP_004281089.1 pyrimidine/purine nucleoside phosphorylase -
  G4D73_RS10885 rlmB 2342455..2343204 (+) 750 WP_005101440.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  G4D73_RS10890 - 2343211..2344134 (+) 924 WP_416232271.1 DMT family transporter -
  G4D73_RS10895 coaE 2344156..2344755 (-) 600 WP_213686753.1 dephospho-CoA kinase -
  G4D73_RS15630 pilD 2344757..2345617 (-) 861 WP_213686754.1 prepilin peptidase Machinery gene
  G4D73_RS10905 pilC 2345617..2346846 (-) 1230 WP_213686755.1 type II secretion system F family protein Machinery gene
  G4D73_RS10910 pilB 2346878..2348587 (-) 1710 WP_213686756.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G4D73_RS10915 tpiA 2348865..2349656 (+) 792 WP_213686757.1 triose-phosphate isomerase -
  G4D73_RS10920 secG 2349670..2349999 (+) 330 WP_148334344.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32059.43 Da        Isoelectric Point: 8.0564

>NTDB_id=449319 G4D73_RS15630 WP_213686754.1 2344757..2345617(-) (pilD) [Acinetobacter sp. WY4]
MQDLIQYFIQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRTDCQMFLHPEQPVIDEAKLSLSKPASTCPKCHQP
IRWYQNIPVISWLVLRGKCANCQNPISIRYPLVEILTAVCALLVVAVFGPTMQMLFGLILTYVLIALTFIDFDTQLLPDR
YTLPLAALGLGVNSYALYTSPSSAIWGYIIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=449319 G4D73_RS15630 WP_213686754.1 2344757..2345617(-) (pilD) [Acinetobacter sp. WY4]
ATGCAAGATCTTATTCAATATTTTATTCAAAACCCAACGGCGCTGTATATCGCAGTTGGGCTTTTTAGTTTATGTATCGG
CAGCTTTCTGAATGTGGTGATCTACCGCACTCCCAAGATGATGGAACAGGAATGGCGTACCGATTGCCAGATGTTTTTGC
ATCCGGAACAGCCGGTGATTGATGAAGCGAAATTAAGTTTAAGCAAACCCGCTTCGACTTGCCCTAAATGTCATCAGCCA
ATCCGCTGGTACCAGAATATTCCAGTTATCAGCTGGCTGGTCCTGCGTGGCAAGTGTGCGAACTGTCAGAATCCTATCAG
CATCCGTTATCCTTTGGTTGAAATTCTGACGGCAGTTTGTGCACTACTTGTCGTAGCAGTATTTGGCCCGACAATGCAAA
TGCTGTTTGGACTGATCCTGACTTATGTGCTGATTGCCCTAACCTTTATTGATTTTGATACCCAGTTATTACCGGACCGT
TATACCCTGCCCCTGGCTGCACTAGGTCTAGGCGTAAATAGTTATGCACTCTATACCTCCCCAAGCTCTGCCATCTGGGG
CTACATCATTGGCTTTTTATGTTTATGGATAGTGTATTACCTGTTTAAAATCATCACCGGTAAAGAAGGTATGGGCTATG
GCGATTTTAAACTGCTTGCGGCTTTGGGCGCCTGGATGGGTCCATTATTATTGCCTTTAATTGTGCTGCTGTCTTCTCTG
GTAGGTGCGATTATTGGCATCATTCTGCTAAAAGTTCGCAAGGAAAATCAGCCTTTTGCTTTTGGTCCTTATATTGCGAT
TGCCGGCTGGATCGCTTTTCTTTGGGGTGAACAAATTATGAAAGTGTATTTAGGTCAGTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

82.456

99.65

0.822
  pilD Acinetobacter baumannii D1279779

82.105

99.65

0.818
  pilD Vibrio cholerae strain A1552

53.933

93.357

0.504
  pilD Vibrio campbellii strain DS40M4

50.526

99.65

0.503
  pilD Neisseria gonorrhoeae MS11

47.35

98.951

0.469