Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   FOC66_RS10140 Genome accession   NZ_CP053939
Coordinates   2110910..2112151 (-) Length   413 a.a.
NCBI ID   WP_003748314.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_758     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2105910..2117151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC66_RS10110 (FOC66_10110) ispH 2106604..2107572 (-) 969 WP_003748306.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FOC66_RS10115 (FOC66_10115) lspA 2107586..2108092 (-) 507 WP_003748308.1 signal peptidase II -
  FOC66_RS10120 (FOC66_10120) glyQ 2108241..2109140 (-) 900 WP_003685919.1 glycine--tRNA ligase subunit alpha -
  FOC66_RS10125 (FOC66_10125) yacG 2109222..2109404 (-) 183 WP_003682475.1 DNA gyrase inhibitor YacG -
  FOC66_RS10130 (FOC66_10130) coaE 2109401..2110021 (-) 621 WP_003748310.1 dephospho-CoA kinase -
  FOC66_RS10135 (FOC66_10135) pilD 2110021..2110908 (-) 888 WP_003748312.1 A24 family peptidase Machinery gene
  FOC66_RS10140 (FOC66_10140) pilG 2110910..2112151 (-) 1242 WP_003748314.1 type II secretion system F family protein Machinery gene
  FOC66_RS10145 (FOC66_10145) pilF 2112231..2113910 (-) 1680 WP_003748316.1 type IV-A pilus assembly ATPase PilB Machinery gene

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45881.00 Da        Isoelectric Point: 9.9459

>NTDB_id=449275 FOC66_RS10140 WP_003748314.1 2110910..2112151(-) (pilG) [Neisseria mucosa strain FDAARGOS_758]
MAQAEQKRSLFGSRSKGKRFTFEGKNIETERLVRGEVVAKDEEEARKKLQRRGIRPLRISKVKTARKRRITQEDITVFTR
QLATMMKAGLPLMQAFEIVARGHSNPSMTEMLMQVRSDVEQGSALGKSFSKYPKYFDRFYCNLVSAGESGGVLESLLDKL
AVYKEKTQAIKKKVKTALTYPIAIIVVAIALIFIMMMFVLPAFKEVYANMGAELPGLTQLVMNLSDLFVDYGWIMIILLI
ASAFGLYKLHEKSPTFQKRIDALILRLPIFGTIVRKATIARWARTTSTLFAAGVPLVEVLDSVAGASGNILYEEATQDIR
AKVTQGLSLTSSMQSTDMFPNMVIQMAAIGEESGSLDDMLNKAAEFYEDEVDNSVSRLSALMEPIIMVVLGSLIGILLIA
MYLPLFNLGNVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=449275 FOC66_RS10140 WP_003748314.1 2110910..2112151(-) (pilG) [Neisseria mucosa strain FDAARGOS_758]
ATGGCTCAAGCAGAGCAAAAAAGAAGTCTGTTCGGTTCAAGAAGCAAAGGTAAGCGTTTTACATTTGAAGGAAAAAACAT
AGAGACCGAACGTCTTGTCCGCGGCGAAGTAGTTGCCAAAGATGAAGAAGAGGCGCGCAAAAAACTCCAGCGCAGAGGCA
TTCGTCCTTTGCGCATCAGCAAAGTCAAAACCGCACGCAAACGCCGCATTACCCAAGAAGACATTACAGTGTTTACGCGC
CAATTGGCAACGATGATGAAGGCAGGCTTGCCGCTGATGCAGGCTTTTGAAATCGTTGCTCGCGGCCACTCCAATCCGAG
CATGACCGAAATGCTGATGCAGGTTCGCTCCGATGTCGAACAAGGTAGCGCACTGGGCAAATCGTTCTCCAAATATCCAA
AATATTTCGACCGTTTCTATTGCAACCTGGTCAGCGCAGGCGAGTCCGGCGGCGTATTAGAAAGCCTATTGGACAAACTG
GCTGTTTATAAAGAAAAAACCCAAGCCATTAAGAAAAAGGTTAAAACCGCGCTGACCTACCCGATTGCCATTATCGTGGT
AGCCATCGCGCTTATCTTCATCATGATGATGTTTGTACTGCCTGCCTTTAAAGAAGTTTATGCTAATATGGGTGCAGAGC
TGCCAGGCCTTACCCAGCTCGTCATGAACTTGTCCGATTTATTTGTCGACTACGGCTGGATTATGATCATCCTTTTGATT
GCTTCCGCCTTCGGCCTGTACAAACTCCATGAGAAATCGCCCACCTTCCAAAAGCGAATCGATGCTTTGATTTTGAGGCT
GCCTATCTTCGGAACCATCGTCCGTAAAGCGACCATTGCCCGTTGGGCGCGTACGACTTCTACCCTCTTCGCAGCCGGCG
TTCCTTTGGTGGAAGTATTAGATTCAGTTGCAGGCGCATCCGGCAATATTCTCTATGAAGAAGCCACTCAAGACATCCGC
GCCAAGGTAACCCAAGGTCTGTCGCTGACATCCAGTATGCAAAGTACTGATATGTTCCCCAACATGGTGATTCAAATGGC
GGCCATCGGCGAAGAGTCTGGCTCCTTGGATGATATGCTGAACAAAGCGGCCGAATTCTACGAAGATGAAGTAGACAACT
CCGTCTCCCGCTTATCTGCCTTGATGGAACCTATCATTATGGTGGTATTGGGTTCGCTCATCGGTATTTTGCTGATTGCC
ATGTATCTGCCGTTGTTCAACTTGGGTAATGTCGTAGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

72.525

97.821

0.709
  pilG Neisseria meningitidis 44/76-A

71.535

97.821

0.7
  pilC Acinetobacter baumannii D1279779

46.985

96.368

0.453
  pilC Acinetobacter baylyi ADP1

46.482

96.368

0.448
  pilC Pseudomonas stutzeri DSM 10701

46

96.852

0.446
  pilC Legionella pneumophila strain ERS1305867

46.096

96.126

0.443
  pilC Vibrio cholerae strain A1552

39

96.852

0.378
  pilC Thermus thermophilus HB27

38.619

94.673

0.366