Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HQ398_RS15540 Genome accession   NZ_CP053882
Coordinates   3350231..3351472 (+) Length   413 a.a.
NCBI ID   WP_215805988.1    Uniprot ID   -
Organism   Aeromonas jandaei strain 3036     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3345231..3356472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ398_RS15515 (HQ398_15490) ampD 3345608..3346177 (-) 570 WP_215805984.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  HQ398_RS15520 (HQ398_15495) - 3346300..3346770 (+) 471 WP_201912989.1 retropepsin-like aspartic protease -
  HQ398_RS15525 (HQ398_15500) nadC 3346774..3347631 (+) 858 WP_215805986.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HQ398_RS15530 (HQ398_15505) tapA 3347955..3348371 (+) 417 WP_156853719.1 type IVa pilus major pilin TapA -
  HQ398_RS15535 (HQ398_15510) pilB 3348379..3350085 (+) 1707 WP_041210692.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  HQ398_RS15540 (HQ398_15515) pilC 3350231..3351472 (+) 1242 WP_215805988.1 type II secretion system F family protein Machinery gene
  HQ398_RS15545 (HQ398_15520) - 3351495..3352366 (+) 872 Protein_3023 A24 family peptidase -
  HQ398_RS15550 (HQ398_15525) coaE 3352384..3352992 (+) 609 WP_215805990.1 dephospho-CoA kinase -
  HQ398_RS15555 (HQ398_15530) zapD 3353037..3353759 (+) 723 WP_215805992.1 cell division protein ZapD -
  HQ398_RS15560 (HQ398_15535) yacG 3353763..3353963 (+) 201 WP_215805995.1 DNA gyrase inhibitor YacG -
  HQ398_RS15565 (HQ398_15540) mutT 3354036..3354440 (-) 405 WP_041210679.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45396.53 Da        Isoelectric Point: 9.6148

>NTDB_id=448390 HQ398_RS15540 WP_215805988.1 3350231..3351472(+) (pilC) [Aeromonas jandaei strain 3036]
MATLTKKTNAPKKVFAFRWQGVNRKGQKVSGELQAENIATVKAELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGEIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFNSFGAELPAFTQFVIGISRFMQNWWYVFFGGIA
LAIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=448390 HQ398_RS15540 WP_215805988.1 3350231..3351472(+) (pilC) [Aeromonas jandaei strain 3036]
ATGGCAACGCTGACCAAGAAAACCAATGCCCCGAAAAAAGTCTTCGCCTTTCGCTGGCAAGGGGTAAACCGTAAAGGACA
AAAAGTCTCTGGTGAGCTTCAGGCTGAGAACATAGCCACAGTGAAGGCAGAGCTGCGCAAGCAGGGCGTCAATGTCACCA
AGGTTGCCAAGAAGAGTCAGGGGCTCTTCTCCAAGGGAGGCGCCAAGATCAAACCGATGGATATTGCCATCGTCTCGCGC
CAGATCACTACCATGCTCTCCGCCGGAGTTCCTCTGGTACAAAGCCTGCAAATCATCGCCCGCAGCCACGAAAAGGCATC
CATGCGCGAACTGATGGGAGAAATAGCCGCGGATGTCGAAACCGGCACTCCCATGTCGGAAGCGCTGCGCCGTCATCCTC
TCTATTTCGATGACCTCTATTGCGATTTGGTTGAAGCTGGCGAGCAGTCCGGCGCACTGGAAACCATCTATGACCGCATC
GCCACCTACCGCGAGAAATCCGAAGCTCTCAAGTCGAAGATCAAAAAGGCGATGTTCTACCCAACCATGGTTATCCTGGT
TGCGATTGTCGTTACCTCCATACTGTTGCTCTTCGTCATCCCGCAATTCGAAGATATCTTCAATAGCTTCGGTGCCGAGC
TGCCTGCCTTTACGCAGTTTGTTATCGGCATCTCCCGCTTTATGCAGAACTGGTGGTACGTTTTCTTCGGCGGAATCGCG
CTGGCCATCTTTCTCTATGTCCGAGCCTGGCGAGCCTCCCAGAAGGTAAAAGATAATACCGACAAGTTTGTGCTCACGAT
TCCGGTAGTCGGGATGATCCTGCATAAAGCAGCCATGGCCCGTTTCGCCCGTACCCTCTCCACCACCTTCTCGGCGGGGA
TTCCGCTGGTCGATGCCTTGGTTTCAGCTGCTGGTGCTTCCGGTAACTACGTCTATCGCACCGCAGTGATGGCCATTCGC
AACGAGGTAGTCGCCGGCATGCAGATTAACGTGGCGATGCGCACTGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGCGAGGAGTCCGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTCGACGATC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCTCTTATCATGGTGGTACTGGGGGTGCTGGTTGGCGGTATGGTGGTTGCC
ATGTATCTGCCCATCTTTAAACTGGGGTCAGTTATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.828

95.884

0.554
  pilC Acinetobacter baumannii D1279779

54.5

96.852

0.528
  pilC Acinetobacter baylyi ADP1

53.401

96.126

0.513
  pilC Legionella pneumophila strain ERS1305867

51.733

97.821

0.506
  pilC Vibrio campbellii strain DS40M4

46.437

98.547

0.458
  pilC Vibrio cholerae strain A1552

46.734

96.368

0.45
  pilG Neisseria meningitidis 44/76-A

40.741

98.063

0.4
  pilG Neisseria gonorrhoeae MS11

40.741

98.063

0.4
  pilC Thermus thermophilus HB27

38

96.852

0.368