Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | MARHY_RS12230 | Genome accession | NC_017067 |
| Coordinates | 2627675..2628895 (+) | Length | 406 a.a. |
| NCBI ID | WP_014422082.1 | Uniprot ID | U7NLZ8 |
| Organism | Marinobacter nauticus ATCC 49840 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2622675..2633895
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MARHY_RS12210 (MARHY2562) | - | 2622930..2623379 (-) | 450 | WP_014422078.1 | pilin | - |
| MARHY_RS12215 (MARHY2563) | - | 2623455..2624930 (-) | 1476 | WP_158011890.1 | O-antigen ligase | - |
| MARHY_RS12220 (MARHY2564) | - | 2625061..2625558 (-) | 498 | WP_041655568.1 | pilin | - |
| MARHY_RS12225 (MARHY2565) | pilB | 2625954..2627672 (+) | 1719 | WP_014422081.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| MARHY_RS12230 (MARHY2566) | pilC | 2627675..2628895 (+) | 1221 | WP_014422082.1 | type II secretion system F family protein | Machinery gene |
| MARHY_RS12235 (MARHY2567) | pilD | 2628965..2629840 (+) | 876 | WP_014422083.1 | A24 family peptidase | Machinery gene |
| MARHY_RS12240 (MARHY2568) | coaE | 2629841..2630458 (+) | 618 | WP_014422084.1 | dephospho-CoA kinase | - |
| MARHY_RS12245 (MARHY2569) | - | 2630547..2631536 (+) | 990 | WP_014422085.1 | hypothetical protein | - |
| MARHY_RS12250 (MARHY2570) | tsaA | 2631545..2632294 (+) | 750 | WP_014422086.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 44380.28 Da Isoelectric Point: 9.6011
>NTDB_id=44710 MARHY_RS12230 WP_014422082.1 2627675..2628895(+) (pilC) [Marinobacter nauticus ATCC 49840]
MAEKAQKLESYVWEGKDRKGNKAKGELTGSNLALVKAQLRKQGIIPDKVKKKPKPLFGGKKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELVMSIRNDISSGTGFASALRKHPRHFDDLYCNLVESGEKAGALEQMLDRIATYLEKT
ELLKKKVKKAMTYPIAVIVVAIVVTAILLVKVVPQFESLFQGFGAELPVFTQMVVGLSEWMQSWWFVVLLGIVGVIFSFK
EAKRRSPKFSDFVDKYTLKLPVVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAVMRIKNDVSSGT
QLQASMRQQDVFPVMAVQLTAIGEESGNLDEMLGKVAEHYEAVVDDMVDNLTALMEPMIMSVLGVLVGGLIVAMYLPIFQ
MGQVVG
MAEKAQKLESYVWEGKDRKGNKAKGELTGSNLALVKAQLRKQGIIPDKVKKKPKPLFGGKKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELVMSIRNDISSGTGFASALRKHPRHFDDLYCNLVESGEKAGALEQMLDRIATYLEKT
ELLKKKVKKAMTYPIAVIVVAIVVTAILLVKVVPQFESLFQGFGAELPVFTQMVVGLSEWMQSWWFVVLLGIVGVIFSFK
EAKRRSPKFSDFVDKYTLKLPVVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAVMRIKNDVSSGT
QLQASMRQQDVFPVMAVQLTAIGEESGNLDEMLGKVAEHYEAVVDDMVDNLTALMEPMIMSVLGVLVGGLIVAMYLPIFQ
MGQVVG
Nucleotide
Download Length: 1221 bp
>NTDB_id=44710 MARHY_RS12230 WP_014422082.1 2627675..2628895(+) (pilC) [Marinobacter nauticus ATCC 49840]
ATGGCAGAAAAAGCGCAGAAGCTGGAATCGTATGTTTGGGAAGGAAAAGACCGCAAAGGCAACAAAGCCAAGGGCGAACT
GACTGGATCAAACCTGGCCCTGGTTAAGGCCCAGTTGAGAAAACAGGGCATTATTCCGGACAAGGTAAAGAAAAAGCCCA
AACCACTCTTTGGTGGCAAAAAGAAAATCACACCGTTCGACATTGCGATGCTGACCCGCCAGCTCGCAACGATGATGAAG
GCTGGCGTACCTCTGGTGCAGAGCTTCGACATCGTTGCCGACGGCCTTGAGAACAAGGGTCTGCAAGAACTGGTGATGAG
CATTCGCAACGACATTTCGTCTGGTACGGGTTTCGCTTCTGCGCTGCGCAAACACCCAAGACACTTTGACGATCTTTATT
GCAACCTGGTGGAGTCCGGCGAGAAAGCCGGTGCTCTGGAGCAGATGCTGGACCGAATTGCCACGTATCTCGAGAAAACT
GAGCTGCTCAAAAAGAAAGTGAAAAAGGCGATGACTTACCCCATTGCCGTTATTGTGGTTGCCATTGTCGTAACCGCCAT
TTTGCTTGTTAAGGTTGTCCCCCAGTTCGAAAGCCTGTTCCAGGGTTTTGGCGCAGAACTGCCGGTGTTCACGCAGATGG
TGGTGGGACTCTCCGAATGGATGCAATCCTGGTGGTTTGTCGTTTTGCTTGGCATTGTAGGCGTTATCTTTTCATTCAAA
GAGGCAAAACGCCGCTCGCCAAAGTTTTCGGATTTTGTCGACAAGTACACACTCAAGTTGCCCGTTGTGGGTGAAATTCT
CGATAAATCCGCCGTCGCGAAGTTTGGCCGGGTGCTTTCCACTACCTTTGCTGCCGGTGTCCCCCTTGTTGATGCGCTGG
ATTCGGTAGCCGGTGCGACGGGCAATGCGGTATATCGCGATGCGGTTATGCGCATCAAAAATGATGTTTCAAGCGGTACC
CAACTCCAGGCATCAATGCGTCAGCAAGACGTCTTCCCCGTTATGGCCGTCCAGCTGACAGCCATCGGCGAAGAGTCCGG
TAACCTGGACGAAATGCTCGGCAAGGTTGCGGAGCATTACGAAGCTGTTGTTGACGATATGGTGGACAACCTCACCGCCT
TGATGGAACCCATGATCATGTCGGTTCTCGGCGTGTTGGTTGGCGGTCTCATCGTCGCGATGTACCTCCCCATCTTCCAG
ATGGGCCAGGTCGTCGGCTGA
ATGGCAGAAAAAGCGCAGAAGCTGGAATCGTATGTTTGGGAAGGAAAAGACCGCAAAGGCAACAAAGCCAAGGGCGAACT
GACTGGATCAAACCTGGCCCTGGTTAAGGCCCAGTTGAGAAAACAGGGCATTATTCCGGACAAGGTAAAGAAAAAGCCCA
AACCACTCTTTGGTGGCAAAAAGAAAATCACACCGTTCGACATTGCGATGCTGACCCGCCAGCTCGCAACGATGATGAAG
GCTGGCGTACCTCTGGTGCAGAGCTTCGACATCGTTGCCGACGGCCTTGAGAACAAGGGTCTGCAAGAACTGGTGATGAG
CATTCGCAACGACATTTCGTCTGGTACGGGTTTCGCTTCTGCGCTGCGCAAACACCCAAGACACTTTGACGATCTTTATT
GCAACCTGGTGGAGTCCGGCGAGAAAGCCGGTGCTCTGGAGCAGATGCTGGACCGAATTGCCACGTATCTCGAGAAAACT
GAGCTGCTCAAAAAGAAAGTGAAAAAGGCGATGACTTACCCCATTGCCGTTATTGTGGTTGCCATTGTCGTAACCGCCAT
TTTGCTTGTTAAGGTTGTCCCCCAGTTCGAAAGCCTGTTCCAGGGTTTTGGCGCAGAACTGCCGGTGTTCACGCAGATGG
TGGTGGGACTCTCCGAATGGATGCAATCCTGGTGGTTTGTCGTTTTGCTTGGCATTGTAGGCGTTATCTTTTCATTCAAA
GAGGCAAAACGCCGCTCGCCAAAGTTTTCGGATTTTGTCGACAAGTACACACTCAAGTTGCCCGTTGTGGGTGAAATTCT
CGATAAATCCGCCGTCGCGAAGTTTGGCCGGGTGCTTTCCACTACCTTTGCTGCCGGTGTCCCCCTTGTTGATGCGCTGG
ATTCGGTAGCCGGTGCGACGGGCAATGCGGTATATCGCGATGCGGTTATGCGCATCAAAAATGATGTTTCAAGCGGTACC
CAACTCCAGGCATCAATGCGTCAGCAAGACGTCTTCCCCGTTATGGCCGTCCAGCTGACAGCCATCGGCGAAGAGTCCGG
TAACCTGGACGAAATGCTCGGCAAGGTTGCGGAGCATTACGAAGCTGTTGTTGACGATATGGTGGACAACCTCACCGCCT
TGATGGAACCCATGATCATGTCGGTTCTCGGCGTGTTGGTTGGCGGTCTCATCGTCGCGATGTACCTCCCCATCTTCCAG
ATGGGCCAGGTCGTCGGCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
66.667 |
99.754 |
0.665 |
| pilC | Acinetobacter baumannii D1279779 |
60.247 |
99.754 |
0.601 |
| pilC | Acinetobacter baylyi ADP1 |
58.374 |
100 |
0.584 |
| pilC | Legionella pneumophila strain ERS1305867 |
53.695 |
100 |
0.537 |
| pilG | Neisseria gonorrhoeae MS11 |
42.928 |
99.261 |
0.426 |
| pilG | Neisseria meningitidis 44/76-A |
42.68 |
99.261 |
0.424 |
| pilC | Vibrio cholerae strain A1552 |
40.64 |
100 |
0.406 |
| pilC | Vibrio campbellii strain DS40M4 |
40.049 |
100 |
0.401 |