Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MARHY_RS12235 Genome accession   NC_017067
Coordinates   2628965..2629840 (+) Length   291 a.a.
NCBI ID   WP_014422083.1    Uniprot ID   -
Organism   Marinobacter nauticus ATCC 49840     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2623965..2634840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MARHY_RS12220 (MARHY2564) - 2625061..2625558 (-) 498 WP_041655568.1 pilin -
  MARHY_RS12225 (MARHY2565) pilB 2625954..2627672 (+) 1719 WP_014422081.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MARHY_RS12230 (MARHY2566) pilC 2627675..2628895 (+) 1221 WP_014422082.1 type II secretion system F family protein Machinery gene
  MARHY_RS12235 (MARHY2567) pilD 2628965..2629840 (+) 876 WP_014422083.1 A24 family peptidase Machinery gene
  MARHY_RS12240 (MARHY2568) coaE 2629841..2630458 (+) 618 WP_014422084.1 dephospho-CoA kinase -
  MARHY_RS12245 (MARHY2569) - 2630547..2631536 (+) 990 WP_014422085.1 hypothetical protein -
  MARHY_RS12250 (MARHY2570) tsaA 2631545..2632294 (+) 750 WP_014422086.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  MARHY_RS12255 (MARHY2571) - 2632339..2634693 (+) 2355 WP_014422087.1 response regulator -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32127.33 Da        Isoelectric Point: 7.1259

>NTDB_id=44711 MARHY_RS12235 WP_014422083.1 2628965..2629840(+) (pilD) [Marinobacter nauticus ATCC 49840]
MLPLETILSTPWLLYLVVIFVSLCVGSFLNVVILRLPKMMKQEWRCQCEEFLEVPEGDRKSDERITLSKPASTCPSCGHK
IRAWENIPVISWLMLGGKCSSCKTRISPRYPIIEALTAVFSVVTVYLLGPSESALWALLMVWALVALTMIDFDTQLLPDG
ITLPLMWLGLVLNSFGVVTDFGSAFWGAVAGYLSLWSVYWLFKLATGKEGMGHGDFKLLAALGAWLGWQLLPAVILLSSL
VGAIVGISLMVFRKHGREVPIPFGPYLAAAGLLSLWFGPEIQAIWFGYLGV

Nucleotide


Download         Length: 876 bp        

>NTDB_id=44711 MARHY_RS12235 WP_014422083.1 2628965..2629840(+) (pilD) [Marinobacter nauticus ATCC 49840]
ATGCTCCCCCTAGAAACCATCCTGTCCACTCCCTGGCTTCTCTATCTGGTCGTCATTTTCGTCTCTCTCTGCGTCGGTAG
TTTTCTGAACGTTGTCATCCTTCGCCTGCCCAAAATGATGAAGCAGGAATGGCGCTGCCAGTGCGAGGAGTTTCTGGAAG
TGCCGGAGGGCGACCGCAAGTCAGATGAGCGGATAACTCTTTCAAAGCCGGCCTCCACCTGCCCGTCCTGCGGCCACAAA
ATTCGTGCCTGGGAGAACATTCCGGTCATAAGTTGGCTAATGCTTGGTGGCAAATGCTCTTCGTGCAAAACACGTATTTC
GCCGCGTTACCCCATCATTGAAGCACTGACTGCGGTTTTTTCCGTTGTAACGGTTTATCTGTTGGGGCCATCCGAGTCCG
CACTCTGGGCGTTGCTGATGGTCTGGGCGCTGGTGGCGCTGACCATGATCGATTTCGACACCCAGCTCCTGCCAGACGGC
ATCACCCTGCCCCTGATGTGGCTTGGCCTGGTGCTTAACTCTTTTGGAGTGGTGACGGATTTTGGCAGTGCTTTCTGGGG
CGCCGTGGCAGGTTACCTCTCGCTCTGGAGCGTGTACTGGTTGTTCAAGCTGGCCACCGGCAAGGAAGGCATGGGGCACG
GGGACTTCAAGCTGTTAGCGGCGCTGGGGGCCTGGCTGGGCTGGCAGCTGCTGCCTGCGGTGATTCTGCTCTCTTCTCTG
GTGGGCGCGATAGTGGGCATCAGTCTGATGGTATTCCGCAAACACGGGCGTGAAGTGCCGATTCCTTTCGGCCCTTACCT
GGCCGCTGCAGGCTTACTCTCGTTGTGGTTTGGGCCTGAAATCCAGGCCATATGGTTCGGGTACCTAGGAGTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

55.474

94.158

0.522
  pilD Acinetobacter nosocomialis M2

54.745

94.158

0.515
  pilD Vibrio campbellii strain DS40M4

52.281

97.938

0.512
  pilD Vibrio cholerae strain A1552

52.143

96.22

0.502
  pilD Neisseria gonorrhoeae MS11

50.602

85.567

0.433

Multiple sequence alignment