Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   XAV_RS05130 Genome accession   NZ_CP053649
Coordinates   1190309..1191565 (-) Length   418 a.a.
NCBI ID   WP_042823467.1    Uniprot ID   A0A098PW92
Organism   Xanthomonas axonopodis pv. vasculorum strain NCPPB 796     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1185309..1196565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XAV_RS05110 (XAV_05130) - 1186506..1186748 (-) 243 WP_171890719.1 hypothetical protein -
  XAV_RS05115 (XAV_05135) - 1187729..1188691 (-) 963 Protein_1012 IS1595 family transposase -
  XAV_RS05120 (XAV_05140) coaE 1188790..1189425 (-) 636 WP_042823464.1 dephospho-CoA kinase -
  XAV_RS05125 (XAV_05145) - 1189439..1190302 (-) 864 WP_042823466.1 A24 family peptidase -
  XAV_RS05130 (XAV_05150) pilC 1190309..1191565 (-) 1257 WP_042823467.1 type II secretion system F family protein Machinery gene
  XAV_RS05135 (XAV_05155) - 1191919..1192356 (+) 438 WP_042823468.1 pilin -
  XAV_RS05140 (XAV_05160) - 1192520..1192918 (+) 399 WP_280528854.1 pilin -
  XAV_RS05145 (XAV_05165) pilB 1192983..1194716 (+) 1734 WP_042824856.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XAV_RS05150 (XAV_05170) pilR 1194956..1196404 (-) 1449 WP_042823471.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45445.87 Da        Isoelectric Point: 10.2788

>NTDB_id=445968 XAV_RS05130 WP_042823467.1 1190309..1191565(-) (pilC) [Xanthomonas axonopodis pv. vasculorum strain NCPPB 796]
MSAIRSAVKTKSAAPAEQMSPFVWEGTDKRGIKMKGEQSARNANLLRAELRRQGITPIVVKVKPKPLFGAAGKKVSAKDI
SFFSRQIATMMKSGVPIVGALEIIGSGQKNPRMRKMVGQIRTDIEGGSSLYEAVSKHPVQFDELYRNLVKAGEGAGVLET
VLDTVATYKENLEALKGKIKKALFYPAMVMAVAMLVSAILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVAWWWLM
LILLAGTVVGSIFAYKRSPAMQHGMDRLILKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEQA
VLRMREDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=445968 XAV_RS05130 WP_042823467.1 1190309..1191565(-) (pilC) [Xanthomonas axonopodis pv. vasculorum strain NCPPB 796]
ATGTCAGCAATACGTAGCGCAGTCAAAACGAAATCCGCCGCACCCGCGGAGCAGATGAGTCCGTTTGTTTGGGAGGGAAC
AGACAAGCGCGGCATCAAGATGAAGGGCGAACAAAGCGCTCGTAATGCAAACCTGCTGCGCGCAGAGTTACGGCGACAAG
GCATTACCCCTATTGTGGTAAAGGTCAAGCCAAAACCACTATTTGGGGCTGCGGGCAAAAAGGTATCTGCAAAGGACATT
TCGTTCTTTAGCCGACAGATTGCCACCATGATGAAATCAGGCGTGCCGATTGTGGGCGCTCTGGAGATCATTGGCAGCGG
ACAAAAAAATCCGCGTATGCGCAAAATGGTCGGACAAATTCGTACAGATATTGAGGGCGGGTCGTCGCTTTACGAAGCTG
TCAGCAAGCACCCAGTGCAGTTTGACGAGCTTTATCGCAACTTGGTCAAAGCAGGTGAAGGTGCCGGCGTGCTGGAAACC
GTTCTGGACACAGTTGCGACTTATAAGGAGAACCTAGAGGCGCTTAAGGGGAAAATAAAGAAGGCGCTCTTTTATCCAGC
CATGGTGATGGCAGTAGCGATGCTTGTCAGCGCCATCTTGCTTGTGTGGGTTGTCCCGCAATTTGAAGATGTCTTCAAAG
GTTTTGGTGCGGAGCTTCCGGCCTTTACACAGATGATCGTCAACCTGTCGCGCTTTATGGTGGCCTGGTGGTGGCTGATG
TTAATTTTACTAGCGGGCACCGTAGTAGGCTCCATATTTGCTTACAAACGCTCCCCGGCAATGCAGCACGGTATGGACCG
ATTGATTCTCAAGGTGCCGATCATCGGTCAAATAATGCATAACAGCTCGATTGCCCGATTTGCGCGAACCACTGCAGTAA
CGTTCAAGGCCGGCGTCCCATTGGTCGAGGCACTAGGTATCGTCGCGGGTGCTACCGGCAATTCAGTATATGAACAAGCC
GTGCTGCGCATGCGCGAAGACGTTTCTGTCGGTTACCCGGTCAACGTCGCGATGAAGCAGGTCAATCTGTTTCCGCACAT
GGTCGTGCAGATGACCGCCATCGGCGAAGAAGCGGGCGCACTGGATGCCATGTTGTTCAAGGTGGCTGAGTATTTCGAAC
AGGAAGTCAACAATGCCGTCGATGCGCTCAGCAGTCTGATCGAACCCCTGATCATGGTGTTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGTATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098PW92

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.301

97.847

0.522
  pilC Acinetobacter baylyi ADP1

51.843

97.368

0.505
  pilC Legionella pneumophila strain ERS1305867

52.525

94.737

0.498
  pilC Acinetobacter baumannii D1279779

51.365

96.411

0.495
  pilG Neisseria gonorrhoeae MS11

42.574

96.651

0.411
  pilG Neisseria meningitidis 44/76-A

42.079

96.651

0.407
  pilC Vibrio cholerae strain A1552

41.75

95.694

0.4
  pilC Vibrio campbellii strain DS40M4

39.706

97.608

0.388