Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   XAV_RS05150 Genome accession   NZ_CP053649
Coordinates   1194956..1196404 (-) Length   482 a.a.
NCBI ID   WP_042823471.1    Uniprot ID   A0A098PXT8
Organism   Xanthomonas axonopodis pv. vasculorum strain NCPPB 796     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1189956..1201404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XAV_RS05130 (XAV_05150) pilC 1190309..1191565 (-) 1257 WP_042823467.1 type II secretion system F family protein Machinery gene
  XAV_RS05135 (XAV_05155) - 1191919..1192356 (+) 438 WP_042823468.1 pilin -
  XAV_RS05140 (XAV_05160) - 1192520..1192918 (+) 399 WP_280528854.1 pilin -
  XAV_RS05145 (XAV_05165) pilB 1192983..1194716 (+) 1734 WP_042824856.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XAV_RS05150 (XAV_05170) pilR 1194956..1196404 (-) 1449 WP_042823471.1 sigma-54 dependent transcriptional regulator Regulator
  XAV_RS05155 (XAV_05175) - 1196677..1198290 (-) 1614 WP_042823472.1 PAS domain-containing sensor histidine kinase -
  XAV_RS05160 (XAV_05180) sucC 1198521..1199690 (+) 1170 WP_042823473.1 ADP-forming succinate--CoA ligase subunit beta -
  XAV_RS05165 (XAV_05185) sucD 1199715..1200590 (+) 876 WP_042823475.1 succinate--CoA ligase subunit alpha -
  XAV_RS05170 (XAV_05190) - 1200749..1200975 (+) 227 Protein_1023 hypothetical protein -
  XAV_RS05175 (XAV_05195) - 1201030..1201401 (+) 372 WP_042823476.1 endonuclease domain-containing protein -

Sequence

Protein


Download         Length: 482 a.a.        Molecular weight: 52288.02 Da        Isoelectric Point: 7.0469

>NTDB_id=445970 XAV_RS05150 WP_042823471.1 1194956..1196404(-) (pilR) [Xanthomonas axonopodis pv. vasculorum strain NCPPB 796]
MGRHLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLSEARELLASNPYDLCLTDMRLPD
GNGIELVTEIAKHYPHTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPEQASRLL
GDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAH
ADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYYRI
NVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISATDL
RLPAHGSHRLGAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLG
ME

Nucleotide


Download         Length: 1449 bp        

>NTDB_id=445970 XAV_RS05150 WP_042823471.1 1194956..1196404(-) (pilR) [Xanthomonas axonopodis pv. vasculorum strain NCPPB 796]
TTGGGCCGCCACCTGCTCGACAATTGTCGGCCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGACGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACTG
CTGCCAACCTGTCCGAAGCGCGCGAGTTGCTGGCCAGCAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAGCACTACCCGCACACCCCGGTGGCCATGATCACCGCGTTCGGCAG
CATGGACCTGGCGGTAGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCTCCGCCACCGCCGGAACAGGCCAGCCGCCTGCTC
GGCGACTCCAGCGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACATCGTCGG
CGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGTGCCGCCGGCCCATTCGTGCCGG
TCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCGGCGCGCAT
GCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCAGAT
GCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGTGCCTCCAGCGAATCGCTGGTGGATGTGC
GCATCCTCTCGGCCACCCACAAGGATCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTACCGCATC
AACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGCGCG
CCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCGGCGCTCGATGCATTGAATCACTACGGCTTCCCCG
GCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGACCTG
CGCCTGCCCGCCCACGGCAGCCACCGTCTGGGCGCCCCCCCTGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGTCGTCGA
CATCGACCCCGCCTCAGCCGCGCTGCCCTCCTACATCGAGCAACTGGAGCGCGCCGCGATCCAGAAGGCGCTGGAAGAAA
ACCGCTGGAACAAGACCAAGACTGCCGCGCAGTTGGGCATTACGTTTCGGGCGTTGCGCTACAAGCTGAAGAAGCTGGGG
ATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(160-325)

Bacterial regulatory protein, Fis family (HTH_8)

(439-479)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098PXT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.341

95.643

0.606
  pilR Acinetobacter baumannii strain A118

49.251

96.888

0.477