Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HND92_RS05185 Genome accession   NZ_CP053553
Coordinates   1048615..1049832 (-) Length   405 a.a.
NCBI ID   WP_012655750.1    Uniprot ID   A0AAX1WYX1
Organism   Diaphorobacter sp. JS3050     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1043615..1054832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HND92_RS05155 (HND92_05160) - 1044636..1045514 (+) 879 WP_011804247.1 ATP-binding protein -
  HND92_RS05160 (HND92_05165) - 1045511..1045957 (+) 447 WP_011804248.1 NUDIX domain-containing protein -
  HND92_RS05165 (HND92_05170) - 1046026..1046256 (-) 231 WP_011804249.1 DNA gyrase inhibitor YacG -
  HND92_RS05170 (HND92_05175) zapD 1046263..1047018 (-) 756 WP_172206340.1 cell division protein ZapD -
  HND92_RS05175 (HND92_05180) coaE 1047109..1047702 (-) 594 WP_253940107.1 dephospho-CoA kinase -
  HND92_RS05180 (HND92_05185) - 1047734..1048615 (-) 882 WP_172206345.1 A24 family peptidase -
  HND92_RS05185 (HND92_05190) pilC 1048615..1049832 (-) 1218 WP_012655750.1 type II secretion system F family protein Machinery gene
  HND92_RS05190 (HND92_05195) pilB 1049853..1051586 (-) 1734 WP_012655751.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HND92_RS05200 (HND92_05205) - 1051927..1052856 (-) 930 WP_047350041.1 polyprenyl synthetase family protein -
  HND92_RS05205 (HND92_05210) rplU 1053081..1053392 (+) 312 WP_011804285.1 50S ribosomal protein L21 -
  HND92_RS05210 (HND92_05215) rpmA 1053410..1053667 (+) 258 WP_011804286.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44423.44 Da        Isoelectric Point: 9.5091

>NTDB_id=445099 HND92_RS05185 WP_012655750.1 1048615..1049832(-) (pilC) [Diaphorobacter sp. JS3050]
MATVASRGIKDFVFEWEGKDRSGKIVRGEVRAAGENQVKATLRRQGVLPTKIKKRRMSAGKKIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTKLLNDIRGDVETGTSLNAAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLALYMEKT
EAIKSKIRSALMYPISVIIVAFVVVTIIMIFVIPAFKEVFTSFGADLPAPTLFVMAISEFFVAYWWLIFGVIGGGFYFFM
QAWKRSEKMQRFMDRFLLKMPIFGALIDKSCVARWTRTLSTMFAAGVPLVEALDSVAGASGNSVYAIATEKIQQEVSTGT
SLTAAMGNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=445099 HND92_RS05185 WP_012655750.1 1048615..1049832(-) (pilC) [Diaphorobacter sp. JS3050]
ATGGCGACCGTTGCATCGAGGGGCATCAAGGACTTTGTCTTCGAGTGGGAGGGCAAGGATCGTAGCGGCAAGATCGTGCG
CGGCGAAGTACGCGCTGCGGGAGAGAATCAGGTCAAGGCGACGCTGCGGCGGCAGGGCGTTCTGCCAACCAAGATCAAGA
AGCGCCGGATGAGCGCGGGCAAAAAGATCAAGCCCAAAGACATCGCGCTGTTCACGCGCCAGATGGCCACGATGATGAAG
GCCGGTGTTCCACTGCTTCAGGCATTTGATATCGTGGGCCGGGGTAATACCAATCCCAGTGTGACCAAGCTGCTCAACGA
TATCCGCGGAGATGTGGAGACAGGAACGTCCCTGAATGCCGCATTCCGTAAATATCCGATGTACTTCGACAGCCTTTACT
GCAACCTCGTAGAGGCCGGCGAAGCCGCCGGTATTCTGGAGGCGTTGCTCGACCGGCTGGCCCTGTACATGGAGAAGACC
GAGGCCATCAAATCCAAGATCCGGTCGGCGCTGATGTACCCGATCTCGGTGATCATCGTTGCGTTTGTCGTGGTGACGAT
CATCATGATTTTCGTGATTCCCGCGTTCAAAGAGGTTTTCACTTCCTTCGGCGCCGACCTGCCCGCTCCTACCCTTTTCG
TGATGGCCATCAGCGAATTCTTCGTGGCTTACTGGTGGCTGATATTCGGCGTCATCGGCGGGGGGTTCTACTTCTTCATG
CAGGCCTGGAAGCGCAGCGAGAAAATGCAGCGTTTCATGGACCGTTTCCTGTTGAAAATGCCCATCTTCGGTGCATTGAT
CGACAAGTCCTGCGTTGCCCGTTGGACCCGCACCCTGTCGACCATGTTCGCTGCCGGTGTGCCATTGGTGGAGGCACTGG
ACTCGGTGGCCGGTGCCTCGGGCAACTCGGTCTACGCCATCGCGACGGAGAAAATTCAGCAGGAAGTCTCCACAGGTACC
AGCCTGACGGCCGCCATGGGGAATGCCAACGTATTCCCCTCCATGGTGCTGCAGATGTGTGCGATCGGCGAGGAATCCGG
CTCCATCGATCACATGCTGGGCAAGGCTGCCGATTTTTACGAAGCTGAAGTGGATGAAATGGTGGCCGGCCTGTCCAGCC
TGATGGAGCCCATCATCATCGTGTTCCTGGGCACGCTGATCGGTGGCATCGTGGTGTCGATGTACCTTCCGATCTTCAAG
CTCGGGCAAGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.309

100

0.553
  pilG Neisseria gonorrhoeae MS11

53.535

97.778

0.523
  pilG Neisseria meningitidis 44/76-A

53.283

97.778

0.521
  pilC Acinetobacter baylyi ADP1

50.754

98.272

0.499
  pilC Legionella pneumophila strain ERS1305867

49.749

98.272

0.489
  pilC Acinetobacter baumannii D1279779

49.874

98.025

0.489
  pilC Vibrio cholerae strain A1552

40.404

97.778

0.395
  pilC Vibrio campbellii strain DS40M4

39.9

99.012

0.395
  pilC Thermus thermophilus HB27

37.845

98.519

0.373