Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HLV59_RS16840 Genome accession   NZ_CP053391
Coordinates   3608702..3609928 (+) Length   408 a.a.
NCBI ID   WP_016144166.1    Uniprot ID   A0A151YPL8
Organism   Acinetobacter lactucae isolate QL-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3603702..3614928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV59_RS16805 rimP 3604372..3604896 (-) 525 WP_016144169.1 ribosome maturation factor RimP -
  HLV59_RS16825 secG 3605534..3605863 (-) 330 WP_171430410.1 preprotein translocase subunit SecG -
  HLV59_RS16830 tpiA 3605876..3606670 (-) 795 WP_216606738.1 triose-phosphate isomerase -
  HLV59_RS16835 pilB 3606962..3608674 (+) 1713 WP_081175451.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HLV59_RS16840 pilC 3608702..3609928 (+) 1227 WP_016144166.1 type II secretion system F family protein Machinery gene
  HLV59_RS18790 pilD 3609928..3610788 (+) 861 WP_171430412.1 A24 family peptidase Machinery gene
  HLV59_RS16850 coaE 3610790..3611386 (+) 597 WP_171430413.1 dephospho-CoA kinase -
  HLV59_RS16855 - 3611383..3612297 (-) 915 WP_171430414.1 DMT family transporter -
  HLV59_RS16860 rlmB 3612333..3613082 (-) 750 WP_171430415.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  HLV59_RS16865 - 3613185..3613511 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  HLV59_RS16870 - 3613588..3614898 (-) 1311 WP_171430416.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45040.49 Da        Isoelectric Point: 9.8960

>NTDB_id=444706 HLV59_RS16840 WP_016144166.1 3608702..3609928(+) (pilC) [Acinetobacter lactucae isolate QL-1]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAIIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=444706 HLV59_RS16840 WP_016144166.1 3608702..3609928(+) (pilC) [Acinetobacter lactucae isolate QL-1]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGAGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGGGTAACTGTCCGTAATATTCGAGAAAAGC
GTAAAAATATTCTTGAGGGTTTATTCAAGAAGAAAGTATCAACACTCGATATCACGATTTTTACCAGACAACTTGCAACA
ATGATGAAAGCAGGGGTTCCACTGGTACAAGGCTTTGAAATTGTAGCGGAAGGCCTAGAAAACCCAGCCATGCGCGAGGT
AGTACTTGGTATTAAAGGCGAAGTTGAAGGTGGTAGTACTTTTGCTTCGGCTTTAAGAAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGTGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGCGTGGCAATTTACAAA
GAAAAAAGTGAATTGCTTAAACAGAAAATTAAGAAGGCTATGAAATATCCAGCAACGGTTATCGTGGTTGCCGTGGTTGT
TACCATTATTTTGATGGTTAAAGTCGTTCCCGTTTTCCAAGACCTGTTTTCATCTTTTGGCGCAGATTTACCTGCATTCA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATCATTGTGATTGGAGCAATTATTGCT
GCATTTTTGGAAGCCAAAAAGCGTAGTAAAAAATTCCGTGATGGTTTAGATAAACTCACCCTGAAACTACCTATCTTTGG
TGATCTGGTTTACAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCAGGTGTTCCACTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAACAAGCCGTCATGAAAATTCGTGAAGATGTTGCT
ACAGGCCAACAACTCCAATTTGCGATGCGCGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTTGTAGGTGGGCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A151YPL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.549

100

0.975
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

52.593

99.265

0.522
  pilG Neisseria gonorrhoeae MS11

45.98

97.549

0.449
  pilG Neisseria meningitidis 44/76-A

45.98

97.549

0.449
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.587

100

0.407
  pilC Thermus thermophilus HB27

36.908

98.284

0.363