Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HLV59_RS18790 Genome accession   NZ_CP053391
Coordinates   3609928..3610788 (+) Length   286 a.a.
NCBI ID   WP_171430412.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate QL-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3604928..3615788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV59_RS16825 secG 3605534..3605863 (-) 330 WP_171430410.1 preprotein translocase subunit SecG -
  HLV59_RS16830 tpiA 3605876..3606670 (-) 795 WP_216606738.1 triose-phosphate isomerase -
  HLV59_RS16835 pilB 3606962..3608674 (+) 1713 WP_081175451.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HLV59_RS16840 pilC 3608702..3609928 (+) 1227 WP_016144166.1 type II secretion system F family protein Machinery gene
  HLV59_RS18790 pilD 3609928..3610788 (+) 861 WP_171430412.1 A24 family peptidase Machinery gene
  HLV59_RS16850 coaE 3610790..3611386 (+) 597 WP_171430413.1 dephospho-CoA kinase -
  HLV59_RS16855 - 3611383..3612297 (-) 915 WP_171430414.1 DMT family transporter -
  HLV59_RS16860 rlmB 3612333..3613082 (-) 750 WP_171430415.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  HLV59_RS16865 - 3613185..3613511 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  HLV59_RS16870 - 3613588..3614898 (-) 1311 WP_171430416.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32362.80 Da        Isoelectric Point: 6.4269

>NTDB_id=444716 HLV59_RS18790 WP_171430412.1 3609928..3610788(+) (pilD) [Acinetobacter lactucae isolate QL-1]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIEHEKLTLSKPASSCPECHQP
IRWYQNIPVISWLMLRGKCGYCQYPISIRYPTIELLTMLCSLVVVMVFGPTLQMLWGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLSALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=444716 HLV59_RS18790 WP_171430412.1 3609928..3610788(+) (pilD) [Acinetobacter lactucae isolate QL-1]
ATGCAAGAAATTATTGCTTATTTCATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTATTGAGCCTATGTATTGG
TAGTTTTTTGAATGTAGTAATTTATCGCACCCCAAGAATGATGGAGCAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCTGAGCAACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAGCCTGCTTCATCATGTCCTGAGTGCCATCAACCC
ATCCGTTGGTATCAAAATATTCCTGTCATAAGCTGGTTGATGTTAAGAGGAAAATGTGGCTATTGCCAATATCCCATTAG
TATTCGTTATCCAACGATTGAACTACTCACTATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTCCTGACTTGGGTTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTGCTCCCCGACCGT
TTTACCTTGCCTTTGGCTGCTCTCGGCTTAGGTATTAATACATTTAATATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGCCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGTTACG
GCGACTTTAAATTGCTTTCCGCATTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTCGGTGCAATTATTGGCATCATTTTACTAAAATTGCGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

95.804

100

0.958
  pilD Acinetobacter baumannii D1279779

94.755

100

0.948
  pilD Vibrio cholerae strain A1552

52.574

95.105

0.5
  pilD Vibrio campbellii strain DS40M4

52.03

94.755

0.493
  pilD Neisseria gonorrhoeae MS11

46.947

91.608

0.43