Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HNO53_RS09190 Genome accession   NZ_CP053383
Coordinates   1972161..1973393 (-) Length   410 a.a.
NCBI ID   WP_209478026.1    Uniprot ID   -
Organism   Halomonas sulfidivorans strain MCCC 1A13718     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1967161..1978393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNO53_RS09160 (HNO53_09160) - 1968179..1968778 (+) 600 WP_209478018.1 2-hydroxychromene-2-carboxylate isomerase -
  HNO53_RS09165 (HNO53_09165) - 1968809..1969552 (+) 744 WP_209478020.1 tellurite resistance TerB family protein -
  HNO53_RS09170 (HNO53_09170) - 1969582..1970445 (-) 864 WP_209478587.1 DNA replication terminus site-binding protein -
  HNO53_RS09175 (HNO53_09175) yacG 1970448..1970675 (-) 228 WP_209478022.1 DNA gyrase inhibitor YacG -
  HNO53_RS09180 (HNO53_09180) coaE 1970709..1971314 (-) 606 WP_209478024.1 dephospho-CoA kinase -
  HNO53_RS09185 (HNO53_09185) pilD 1971334..1972164 (-) 831 WP_242597591.1 prepilin peptidase Machinery gene
  HNO53_RS09190 (HNO53_09190) pilC 1972161..1973393 (-) 1233 WP_209478026.1 type II secretion system F family protein Machinery gene
  HNO53_RS09195 (HNO53_09195) pilB 1973507..1975300 (-) 1794 WP_242597592.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HNO53_RS09200 - 1975725..1975856 (+) 132 Protein_1811 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HNO53_RS09205 (HNO53_09205) - 1976249..1978039 (+) 1791 WP_209478028.1 DUF7305 domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45015.75 Da        Isoelectric Point: 9.9184

>NTDB_id=444654 HNO53_RS09190 WP_209478026.1 1972161..1973393(-) (pilC) [Halomonas sulfidivorans strain MCCC 1A13718]
MATRTAKAPRKLKLYRWRWTGKGPGGRLVSGEVVAAEKFEVERELANQSIIVKNVRRKGGLTGGMGTIKPRDTMLFARQM
ATMIRAGVPVLQAFQVVAESIRKPAMSAVVQQMMNEVAAGSSFSQALRNHPEHFDSLFCNLVEAGESSGSLDRMLDRIAT
YKEKVESLKGRVKKALWYPIAVILVGIGVTALLLIKVVPQFESLFHGFGAELPAMTRMTIALSEFAQQYWLWGLGGLIAF
VYLMRQGIKRSPAFAYRVHAFLLKVPVLGDIFDKSAVARYSRTLATTYGAGVPMVEALDIAAGATGNLVYERATRQIRED
VSTGQQLHFAMRLTERFPALAVQMVGIGEESGALDAMLNRVADYYEEEVDNKVDALTSLLEPLIIVVLGILVGGLVVSMY
LPIFELGTVL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=444654 HNO53_RS09190 WP_209478026.1 1972161..1973393(-) (pilC) [Halomonas sulfidivorans strain MCCC 1A13718]
ATGGCAACCAGAACGGCGAAAGCGCCCCGGAAGCTCAAACTTTACCGTTGGCGCTGGACGGGCAAGGGCCCTGGCGGGCG
CCTGGTCAGCGGCGAGGTGGTGGCCGCCGAGAAGTTCGAGGTGGAGCGCGAGCTGGCCAACCAGAGCATCATCGTCAAGA
ACGTGCGTCGCAAGGGCGGGCTGACCGGCGGCATGGGCACCATCAAGCCCCGTGACACCATGCTCTTCGCCCGCCAGATG
GCCACCATGATTCGCGCCGGGGTACCGGTACTGCAGGCCTTTCAGGTGGTCGCCGAGAGTATTCGCAAGCCGGCCATGAG
CGCAGTGGTACAGCAGATGATGAACGAGGTGGCCGCCGGCTCGAGCTTCTCCCAGGCGCTGCGTAACCATCCGGAACATT
TCGACAGCCTGTTCTGCAATCTGGTGGAAGCCGGCGAGAGTTCCGGCTCGCTTGACCGCATGCTCGACCGTATCGCTACT
TACAAGGAGAAGGTGGAGTCGCTGAAGGGTCGGGTGAAGAAGGCACTGTGGTATCCGATCGCAGTGATCCTGGTGGGGAT
CGGCGTCACGGCGCTGCTGTTGATCAAGGTCGTGCCCCAGTTCGAGAGCCTGTTCCATGGCTTCGGCGCCGAGCTGCCGG
CCATGACTCGCATGACCATCGCCCTTTCCGAATTCGCCCAGCAGTACTGGCTGTGGGGGCTTGGCGGCCTGATCGCCTTC
GTCTACCTGATGCGCCAGGGCATCAAGCGCTCGCCGGCCTTCGCCTACCGTGTGCATGCGTTCCTGCTCAAGGTGCCGGT
GCTGGGCGACATCTTCGACAAGTCCGCCGTGGCGCGCTATTCGCGCACGCTGGCCACCACCTACGGCGCCGGCGTGCCCA
TGGTGGAAGCACTGGACATCGCCGCCGGGGCTACCGGGAACCTGGTCTACGAGCGCGCCACGCGGCAGATCCGTGAGGAC
GTTTCCACCGGCCAGCAGCTTCACTTCGCGATGCGCCTGACCGAGCGCTTCCCTGCGCTGGCGGTGCAGATGGTCGGTAT
CGGCGAGGAGTCCGGCGCGTTGGACGCCATGCTCAACCGGGTGGCCGACTACTACGAAGAGGAGGTCGACAACAAGGTCG
ACGCCCTCACCTCGCTGCTCGAGCCGCTGATCATCGTGGTGCTGGGGATCCTGGTCGGCGGCCTGGTGGTCTCCATGTAT
CTGCCGATCTTCGAGCTGGGCACGGTGCTGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)

Type II secretion system (T2SS), protein F (T2SSF)

(281-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.723

98.537

0.52
  pilC Acinetobacter baumannii D1279779

50.882

96.829

0.493
  pilC Acinetobacter baylyi ADP1

50.882

96.829

0.493
  pilC Legionella pneumophila strain ERS1305867

50.126

96.829

0.485
  pilC Vibrio cholerae strain A1552

43.98

99.268

0.437
  pilC Vibrio campbellii strain DS40M4

43.564

98.537

0.429
  pilG Neisseria gonorrhoeae MS11

44.33

94.634

0.42
  pilG Neisseria meningitidis 44/76-A

44.072

94.634

0.417