Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HNO53_RS09185 Genome accession   NZ_CP053383
Coordinates   1971334..1972164 (-) Length   276 a.a.
NCBI ID   WP_242597591.1    Uniprot ID   -
Organism   Halomonas sulfidivorans strain MCCC 1A13718     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1966334..1977164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNO53_RS09160 (HNO53_09160) - 1968179..1968778 (+) 600 WP_209478018.1 2-hydroxychromene-2-carboxylate isomerase -
  HNO53_RS09165 (HNO53_09165) - 1968809..1969552 (+) 744 WP_209478020.1 tellurite resistance TerB family protein -
  HNO53_RS09170 (HNO53_09170) - 1969582..1970445 (-) 864 WP_209478587.1 DNA replication terminus site-binding protein -
  HNO53_RS09175 (HNO53_09175) yacG 1970448..1970675 (-) 228 WP_209478022.1 DNA gyrase inhibitor YacG -
  HNO53_RS09180 (HNO53_09180) coaE 1970709..1971314 (-) 606 WP_209478024.1 dephospho-CoA kinase -
  HNO53_RS09185 (HNO53_09185) pilD 1971334..1972164 (-) 831 WP_242597591.1 prepilin peptidase Machinery gene
  HNO53_RS09190 (HNO53_09190) pilC 1972161..1973393 (-) 1233 WP_209478026.1 type II secretion system F family protein Machinery gene
  HNO53_RS09195 (HNO53_09195) pilB 1973507..1975300 (-) 1794 WP_242597592.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HNO53_RS09200 - 1975725..1975856 (+) 132 Protein_1811 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 29954.19 Da        Isoelectric Point: 7.9318

>NTDB_id=444653 HNO53_RS09185 WP_242597591.1 1971334..1972164(-) (pilD) [Halomonas sulfidivorans strain MCCC 1A13718]
MSVLWPLAAVLGLCLGSFLNVVIVRLPVMLMLGWRAEAREALELPEEEAPRFNLLVPRSLCPQCETPIAWHDNLPLIGWF
KRRGRCASCHARISPQYPLVELAGAGLALAVLALYGATWQGLFVFGACLALLALAVIDLRTQLLPDMMTLPLLWAGLLYQ
LLFQPLMLTSAVIGAIAGYLALWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQYLPMVLILSAGVGAIVGILVQLAL
PRLRGAPMPFGPYLAAAGWIALLVGEPLMAAYIGFI

Nucleotide


Download         Length: 831 bp        

>NTDB_id=444653 HNO53_RS09185 WP_242597591.1 1971334..1972164(-) (pilD) [Halomonas sulfidivorans strain MCCC 1A13718]
GTGAGTGTGTTATGGCCGCTGGCGGCCGTGCTGGGTCTTTGCCTGGGTAGCTTCCTCAACGTGGTGATCGTGCGCCTGCC
GGTCATGCTGATGCTGGGCTGGCGGGCCGAGGCCCGCGAGGCGCTGGAGCTGCCCGAGGAGGAAGCCCCTCGCTTCAATC
TGCTGGTGCCGCGCTCGCTCTGCCCCCAGTGCGAAACGCCCATTGCCTGGCACGACAACCTGCCGCTGATCGGCTGGTTC
AAGCGCCGTGGTCGCTGCGCTTCCTGCCATGCCCGGATCAGCCCCCAATATCCGCTGGTGGAGCTGGCCGGTGCCGGCCT
GGCGTTGGCCGTGTTGGCGCTCTACGGAGCCACCTGGCAGGGTCTGTTCGTGTTCGGCGCCTGCCTGGCGCTGCTGGCCC
TGGCCGTGATCGACCTGCGCACCCAGCTGCTGCCGGATATGATGACGCTGCCGCTGCTGTGGGCCGGGCTGCTCTACCAG
TTGCTGTTCCAGCCCCTGATGCTTACCAGTGCCGTTATCGGTGCGATAGCGGGCTACCTTGCCCTGTGGAGCGTCTACTG
GCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGTTACGGCGACTTCAAGCTGCTGGCGGCCCTGGGCGCCTGGCTCG
GCTGGCAGTACCTGCCCATGGTGCTGATCCTTTCCGCGGGCGTGGGGGCGATCGTCGGCATCCTGGTACAGCTCGCCCTG
CCCCGCCTGCGCGGCGCGCCGATGCCGTTCGGCCCCTACCTGGCCGCTGCGGGCTGGATCGCGTTGCTGGTAGGTGAACC
GCTGATGGCTGCCTATATCGGCTTCATTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(10-112)

Type IV leader peptidase family (Peptidase_A24)

(128-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

52.688

100

0.533
  pilD Vibrio campbellii strain DS40M4

49.818

99.638

0.496
  pilD Acinetobacter baumannii D1279779

45.878

100

0.464
  pilD Acinetobacter nosocomialis M2

45.878

100

0.464
  pilD Neisseria gonorrhoeae MS11

46.269

97.101

0.449