Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HNO52_RS11710 Genome accession   NZ_CP053382
Coordinates   2517244..2518476 (+) Length   410 a.a.
NCBI ID   WP_197565486.1    Uniprot ID   A0A7M1QBC5
Organism   Halomonas sp. MCCC 1A13316     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2512244..2523476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNO52_RS11695 (HNO52_11695) - 2512925..2514346 (-) 1422 WP_197565484.1 O-antigen ligase family protein -
  HNO52_RS21080 - 2514754..2514885 (-) 132 Protein_2312 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HNO52_RS11705 (HNO52_11705) pilB 2515329..2517128 (+) 1800 WP_197565485.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HNO52_RS11710 (HNO52_11710) pilC 2517244..2518476 (+) 1233 WP_197565486.1 type II secretion system F family protein Machinery gene
  HNO52_RS11715 (HNO52_11715) pilD 2518486..2519337 (+) 852 WP_197565487.1 A24 family peptidase Machinery gene
  HNO52_RS11720 (HNO52_11720) coaE 2519402..2520007 (+) 606 WP_197565488.1 dephospho-CoA kinase -
  HNO52_RS11725 (HNO52_11725) yacG 2520067..2520294 (+) 228 WP_197565489.1 DNA gyrase inhibitor YacG -
  HNO52_RS11730 (HNO52_11730) - 2520351..2521160 (+) 810 WP_197569207.1 DNA replication terminus site-binding protein -
  HNO52_RS11735 (HNO52_11735) - 2521186..2522556 (-) 1371 WP_197565490.1 MFS transporter -
  HNO52_RS11740 (HNO52_11740) - 2522563..2523321 (-) 759 WP_197565491.1 tellurite resistance TerB family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45092.83 Da        Isoelectric Point: 9.9390

>NTDB_id=444635 HNO52_RS11710 WP_197565486.1 2517244..2518476(+) (pilC) [Halomonas sp. MCCC 1A13316]
MTTRTARAPKKLRLYRWRWTGKGPGGRLVSGEVVAAEKFEVERELANQNIIVRNVRRKGGLTGGMGTVKPRDIMLFARQM
ATMIRAGVPVLQAFQVVAESIRKPAMSAVVQQMMNEVAAGSSFSQALRNHPDHFDSLFCNLVEAGESSGSLDRMLDRIAI
YKEKVESLKGRVKKALWYPIAVILVGVGVTALLLIKVVPQFESLFHGFGAELPAMTRMTIALSEFAQQYWLWGLGGLIAF
VYLLRQGIKRSPAFAYRVHAFLLKVPVLGDIFDKSAVARYSRTLATTYGAGVPMVEALDIAAGATGNLVYERATRQIRED
VSTGQQLHFAMRLTERFPALAVQMVGIGEESGALDAMLNRVADYYEEEVDNKVDALTSLLEPLIIVVLGILVGGLVVSMY
LPIFELGTVL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=444635 HNO52_RS11710 WP_197565486.1 2517244..2518476(+) (pilC) [Halomonas sp. MCCC 1A13316]
ATGACAACCAGAACGGCTAGAGCGCCAAAGAAGCTGAGACTGTACCGCTGGCGCTGGACGGGCAAGGGCCCTGGCGGGCG
CCTGGTCAGCGGTGAAGTAGTGGCCGCCGAGAAGTTCGAGGTGGAACGCGAGCTGGCCAACCAGAACATCATCGTCAGGA
ACGTGCGCCGCAAAGGCGGGCTGACTGGCGGTATGGGAACCGTCAAACCCCGGGACATCATGCTCTTCGCTCGCCAGATG
GCCACCATGATTCGTGCCGGTGTGCCGGTGCTCCAGGCGTTCCAGGTGGTGGCCGAGAGCATCCGCAAGCCGGCCATGAG
TGCCGTGGTTCAGCAGATGATGAACGAGGTGGCAGCCGGCTCGAGCTTCTCCCAGGCGCTGCGCAATCACCCCGACCATT
TCGATAGCCTGTTCTGCAACCTAGTGGAAGCGGGCGAGAGTTCCGGCTCGCTGGACCGCATGCTCGATCGTATCGCCATC
TACAAGGAAAAGGTGGAGTCGCTCAAGGGCCGGGTGAAGAAGGCGCTGTGGTACCCCATTGCGGTAATCCTGGTGGGGGT
CGGCGTCACGGCGCTGCTGCTGATCAAGGTGGTACCGCAGTTCGAAAGCCTGTTCCACGGTTTCGGCGCCGAACTGCCGG
CCATGACCCGCATGACCATCGCCCTTTCCGAATTCGCCCAACAGTACTGGCTGTGGGGCCTGGGCGGGTTGATCGCCTTC
GTCTACCTGTTGCGCCAGGGCATCAAGCGCTCGCCGGCTTTCGCCTACCGCGTACATGCGTTCCTGCTCAAGGTACCGGT
GCTCGGCGATATCTTCGACAAATCCGCCGTGGCACGCTATTCCCGTACCCTGGCAACCACCTACGGCGCCGGCGTGCCCA
TGGTGGAAGCGTTGGACATCGCCGCCGGGGCCACCGGCAATCTGGTCTACGAGCGCGCCACGCGGCAGATCCGCGAGGAC
GTCTCCACCGGCCAGCAGCTCCACTTCGCCATGCGCCTGACCGAACGCTTCCCCGCGCTGGCGGTGCAGATGGTGGGCAT
CGGCGAGGAGTCCGGCGCGCTGGATGCCATGCTCAACCGGGTGGCCGACTATTACGAGGAGGAAGTCGACAACAAGGTCG
ATGCCCTCACCTCGCTGCTGGAGCCGCTGATCATCGTGGTGCTGGGGATACTGGTCGGCGGCCTGGTGGTCTCGATGTAC
TTACCGATCTTCGAGTTGGGCACTGTGCTGTGA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(281-402)

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.723

98.537

0.52
  pilC Acinetobacter baumannii D1279779

51.637

96.829

0.5
  pilC Acinetobacter baylyi ADP1

51.385

96.829

0.498
  pilC Legionella pneumophila strain ERS1305867

49.874

96.829

0.483
  pilC Vibrio cholerae strain A1552

43.98

99.268

0.437
  pilC Vibrio campbellii strain DS40M4

43.812

98.537

0.432
  pilG Neisseria meningitidis 44/76-A

44.072

94.634

0.417
  pilG Neisseria gonorrhoeae MS11

44.01

93.659

0.412