Detailed information NTG0443992

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: K562_RS04055
• Genome accession: NZ_CP053300
• Coordinates: 857443..858603 (-)
• Length: 386 a.a.
• NCBI ID: WP_006483736.1
• Uniprot ID: B4EAQ6
• Organism: Burkholderia cenocepacia strain K56-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 852443..863603

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K562_RS04035 (K562_10819)	-	853017..853400 (+)	384	WP_006483747.1	nuclear transport factor 2 family protein	-
K562_RS04040 (K562_10820)	leuA	853544..855190 (-)	1647	WP_006483729.1	2-isopropylmalate synthase	-
K562_RS04045 (K562_10821)	ybiB	855559..856533 (-)	975	WP_006483732.1	DNA-binding protein YbiB	-
K562_RS04050 (K562_10822)	maiA	856713..857357 (+)	645	WP_006499022.1	maleylacetoacetate isomerase	-
K562_RS04055 (K562_10823)	pilA	857443..858603 (-)	1161	WP_006483736.1	signal recognition particle-docking protein FtsY	Machinery gene
K562_RS04060 (K562_10824)	rsmD	858820..859434 (+)	615	WP_006483748.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
K562_RS04065 (K562_10825)	coaD	859546..860043 (+)	498	WP_006477773.1	pantetheine-phosphate adenylyltransferase	-
K562_RS04070 (K562_10826)	-	860103..860369 (+)	267	WP_006483745.1	YfhL family 4Fe-4S dicluster ferredoxin	-
K562_RS04075 (K562_10827)	hisC	860447..861514 (-)	1068	WP_006483731.1	histidinol-phosphate transaminase	-
K562_RS04080 (K562_10828)	pth	861631..862230 (-)	600	WP_006477776.1	aminoacyl-tRNA hydrolase	-
K562_RS04085 (K562_10829)	-	862351..862956 (-)	606	WP_006483734.1	50S ribosomal protein L25/general stress protein Ctc	-

Sequence

Protein

• Length: 386 a.a.
• Molecular weight: 40953.90 Da
• Isoelectric Point: 4.7940

>NTDB_id=443992 K562_RS04055 WP_006483736.1 857443..858603(-) (pilA) [Burkholderia cenocepacia strain K56-2]
MFSFFKRFKKTQEPDPAESQSADAQQADEASDADAPVLDAPPAASVPPAPAQPAAPAVVMTVTPTNDGRDEVVETVEIVP
PPLQDASAKKSWLARLKTGLAKTGSSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYLLGALREKVRAGRLTDPQQV
KAALHDLLVELLTPLEKSLMLGRAQPLVMMITGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERN
NVTVVQQESGDPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNAL
TQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADALLG

Nucleotide

• Length: 1161 bp

>NTDB_id=443992 K562_RS04055 WP_006483736.1 857443..858603(-) (pilA) [Burkholderia cenocepacia strain K56-2]
ATGTTCAGTTTCTTCAAACGATTCAAGAAAACGCAGGAGCCCGATCCGGCGGAATCGCAATCGGCCGACGCGCAGCAAGC
GGACGAAGCGTCCGACGCCGACGCGCCCGTGCTCGACGCGCCGCCCGCGGCCAGCGTGCCGCCAGCGCCCGCGCAACCGG
CTGCGCCGGCCGTCGTGATGACCGTCACGCCGACCAACGACGGCCGCGACGAAGTCGTCGAGACGGTCGAGATCGTGCCG
CCGCCGCTGCAGGACGCGTCCGCGAAGAAGTCGTGGCTCGCGCGCCTGAAGACGGGGCTCGCGAAGACGGGCTCGAGCAT
CACCGGCGTCTTCGTCAACACGAAGATCGACGAGGATCTGTACGAGGAGCTCGAAACCGCGCTGCTGATGTCCGACGCGG
GCGTCGACGCGACCGAATACCTGCTCGGCGCGCTGCGCGAAAAGGTGCGCGCGGGCCGGCTGACCGATCCGCAGCAGGTG
AAGGCTGCGCTGCACGACCTGCTCGTCGAGCTGCTGACGCCGCTCGAGAAATCGCTGATGCTCGGCCGCGCGCAGCCGCT
CGTGATGATGATCACCGGCGTGAACGGCGCAGGCAAGACGACCAGCATCGGCAAGCTCGCGAAGCACCTGCAGAGCTTCG
ACCAGTCGGTGCTGCTGGCTGCCGGCGACACGTTCCGCGCGGCCGCGCGCGAACAGCTGGCGGTCTGGGGCGAGCGCAAC
AACGTGACGGTCGTGCAGCAGGAGAGCGGCGATCCGGCCGCGGTGATCTTCGACGCGGTCAGCGCCGCGCGCGCGCGCAA
GATCGACGTGATGATGGCCGACACGGCCGGCCGCCTGCCGACGCAGCTGCATCTGATGGAGGAGCTGAAGAAGGTGAAGC
GCGTGATCGCGAAGGCGCACGACGGCGCGCCGCACGAAGTGCTGCTGGTGATCGACGCGAACACCGGCCAGAACGCGCTC
ACGCAGGTGAAGGCCTTCGACGACGCGCTGGGCCTGACCGGCCTGATCGTCACGAAGCTCGACGGCACCGCGAAGGGCGG
GATTCTCGCCGCGATCGCGCGGCAACGGCCGGTGCCCGTCTACTTCATCGGCGTCGGCGAGAAGGTCGAGGACCTGCAGC
CGTTCAGCGCGGTGGAATTCGCGGACGCGCTGCTCGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (187-386)

• SRP54-type protein, helical bundle domain (SRP54_N) (104-166)

3D structure

• AlphaFold DB: B4EAQ6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.606	100	0.578