Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DSM104443_RS01865 Genome accession   NZ_CP053069
Coordinates   353988..355214 (+) Length   408 a.a.
NCBI ID   WP_171089009.1    Uniprot ID   A0A6M4GR98
Organism   Usitatibacter rugosus strain 0125_3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 348988..360214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104443_RS01845 (DSM104443_00342) prfA 349104..350186 (-) 1083 WP_171089005.1 peptide chain release factor 1 -
  DSM104443_RS01850 (DSM104443_00343) hemA 350183..351445 (-) 1263 WP_171089006.1 glutamyl-tRNA reductase -
  DSM104443_RS01855 (DSM104443_00344) - 351660..352199 (+) 540 WP_171089007.1 glutathione peroxidase -
  DSM104443_RS01860 (DSM104443_00345) pilB 352263..353969 (+) 1707 WP_171089008.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DSM104443_RS01865 (DSM104443_00346) pilC 353988..355214 (+) 1227 WP_171089009.1 type II secretion system F family protein Machinery gene
  DSM104443_RS01870 (DSM104443_00347) - 355289..356248 (+) 960 WP_171089010.1 A24 family peptidase -
  DSM104443_RS01875 (DSM104443_00348) coaE 356245..356850 (+) 606 WP_212756896.1 dephospho-CoA kinase -
  DSM104443_RS01880 (DSM104443_00349) zapD 356939..357694 (+) 756 WP_171089011.1 cell division protein ZapD -
  DSM104443_RS01885 (DSM104443_00350) - 357691..357885 (+) 195 WP_246232452.1 DNA gyrase inhibitor YacG -
  DSM104443_RS01890 (DSM104443_00351) - 357982..358422 (+) 441 WP_171089012.1 DUF2244 domain-containing protein -
  DSM104443_RS01895 (DSM104443_00352) coxB 358447..359610 (+) 1164 WP_171089013.1 cytochrome c oxidase subunit II -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44325.22 Da        Isoelectric Point: 9.8273

>NTDB_id=442662 DSM104443_RS01865 WP_171089009.1 353988..355214(+) (pilC) [Usitatibacter rugosus strain 0125_3]
MAAVAKKDTKDVKLYNYSWTGKDKTGKVIKGEVRAGGEHVVLATLRRQGLQQISVKKVSTRGGKKITEKDITIFTRQLAV
MMKAGVPLLQSFDIVGKGHANPSVGKLLLDIKTEVETGSSLGQAFRKYPQHFDALFCNLVAAGEQAGILDALLDRLATYK
EKILAIKSKIKGALFYPIAVIAIGIIIVTVIMIFVIPVFKDLFKSFGADLPAPTQIVLNMSEFFVAYWWIMLGIGVGTFF
AVSYTYKRSTAMQRSFDRLLLRLPVFGDVIRKASIARWCRTLSTMFAAGVPLVESLDSVAGAAGNYVYYEATKRIQNEVS
TGTSLTVAMQNANVFPSMVMQMTAIGEESGALDSMLSKVADFFEQEVDDSVDALASLMEPAIMVILGGLIGGLVVAMYLP
IFKLGGAV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=442662 DSM104443_RS01865 WP_171089009.1 353988..355214(+) (pilC) [Usitatibacter rugosus strain 0125_3]
ATGGCAGCGGTCGCGAAGAAAGACACCAAGGACGTCAAGCTCTACAACTATTCCTGGACCGGGAAGGACAAGACCGGGAA
AGTGATCAAGGGCGAGGTGCGCGCGGGCGGCGAGCACGTGGTGCTGGCCACGCTGCGCAGGCAGGGCCTGCAGCAGATCT
CCGTCAAGAAGGTCTCGACGCGCGGCGGCAAGAAGATCACCGAGAAGGACATCACCATCTTCACGCGCCAGCTGGCGGTG
ATGATGAAAGCCGGCGTCCCGCTGCTGCAGTCGTTCGACATCGTGGGCAAGGGCCACGCGAACCCGTCCGTGGGCAAGCT
GCTGCTCGACATCAAGACCGAGGTCGAGACCGGCTCCTCCCTGGGCCAGGCTTTCCGCAAGTACCCGCAGCACTTCGACG
CGCTCTTCTGCAACCTGGTCGCCGCGGGCGAGCAGGCCGGTATTCTCGACGCGCTGCTCGATCGCCTCGCGACCTACAAG
GAAAAGATCCTCGCCATCAAGTCGAAGATCAAGGGCGCGCTCTTCTACCCGATCGCGGTGATCGCCATCGGCATCATCAT
CGTCACGGTGATCATGATTTTCGTGATCCCGGTGTTCAAGGACCTCTTCAAGAGCTTCGGCGCGGACCTGCCGGCGCCCA
CGCAGATCGTGCTGAACATGTCGGAGTTCTTCGTCGCCTACTGGTGGATCATGCTCGGGATCGGCGTGGGCACCTTCTTC
GCGGTCTCGTACACGTACAAGCGAAGCACCGCGATGCAGCGCAGCTTCGACCGCCTGCTGCTTCGCCTGCCGGTGTTCGG
CGACGTGATCCGCAAGGCTTCGATCGCGCGCTGGTGCCGCACGCTCTCGACGATGTTCGCCGCCGGCGTGCCGCTGGTGG
AATCGCTCGACTCGGTGGCGGGCGCCGCGGGCAACTACGTCTACTACGAGGCGACCAAGCGGATCCAGAACGAGGTCTCC
ACGGGTACCAGCCTCACCGTGGCCATGCAGAACGCGAACGTGTTCCCGAGCATGGTGATGCAGATGACGGCGATCGGCGA
GGAATCGGGCGCGCTCGACTCGATGCTCTCCAAGGTCGCGGACTTCTTCGAGCAGGAGGTCGACGACTCGGTCGACGCCC
TCGCCTCCCTGATGGAGCCGGCGATCATGGTGATCCTGGGCGGCCTCATCGGCGGCCTCGTGGTGGCCATGTACCTGCCG
ATCTTCAAGCTGGGCGGCGCCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M4GR98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.234

98.529

0.525
  pilC Acinetobacter baumannii D1279779

53.015

97.549

0.517
  pilC Legionella pneumophila strain ERS1305867

51.852

99.265

0.515
  pilC Acinetobacter baylyi ADP1

51.5

98.039

0.505
  pilG Neisseria meningitidis 44/76-A

51.938

94.853

0.493
  pilG Neisseria gonorrhoeae MS11

51.68

94.853

0.49
  pilC Vibrio cholerae strain A1552

41.045

98.529

0.404
  pilC Vibrio campbellii strain DS40M4

39

98.039

0.382
  pilC Thermus thermophilus HB27

36.386

99.02

0.36