Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   HG541_RS04635 Genome accession   NZ_CP053044
Coordinates   1058695..1059795 (-) Length   366 a.a.
NCBI ID   WP_075670822.1    Uniprot ID   A0A8I1BLI0
Organism   Proteus terrae subsp. cibarius strain HNCF43W     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1053695..1064795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG541_RS04605 (HG541_04605) - 1053793..1055043 (+) 1251 WP_099659318.1 aromatic amino acid transporter -
  HG541_RS04610 (HG541_04610) mutT 1055150..1055542 (+) 393 WP_075670812.1 8-oxo-dGTP diphosphatase MutT -
  HG541_RS04615 (HG541_04615) yacG 1055629..1055841 (-) 213 WP_075670814.1 DNA gyrase inhibitor YacG -
  HG541_RS04620 (HG541_04620) zapD 1055896..1056648 (-) 753 WP_075670816.1 cell division protein ZapD -
  HG541_RS04625 (HG541_04625) coaE 1056641..1057264 (-) 624 WP_075670818.1 dephospho-CoA kinase -
  HG541_RS04630 (HG541_04630) - 1057499..1058698 (-) 1200 WP_159242094.1 type II secretion system F family protein -
  HG541_RS04635 (HG541_04635) pilB 1058695..1059795 (-) 1101 WP_075670822.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  HG541_RS04640 (HG541_04640) ppdD 1059897..1060340 (-) 444 WP_075670824.1 prepilin peptidase-dependent pilin -
  HG541_RS04645 (HG541_04645) ampD 1060551..1061093 (+) 543 WP_075670826.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  HG541_RS04650 (HG541_04650) pdhR 1061419..1062189 (+) 771 WP_075670940.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41486.06 Da        Isoelectric Point: 7.6585

>NTDB_id=442427 HG541_RS04635 WP_075670822.1 1058695..1059795(-) (pilB) [Proteus terrae subsp. cibarius strain HNCF43W]
MDITHSATEFIEHLLRTSILKRVSDLHIEPQQISVRIRARIDNHLYLFSPPPNEFSEEIVTRLKVLANLNIAEKRLPQDG
QFNWSYHEKNYSIRIATLPTLYGEKVVLRLINNLQQPELNHLGFQPSHLTLLKKYLNLPQGMILVTGPTGSGKTLTLYSC
LRYLNKENLNINSVEDPVELPLKGINQIQISEKSGISFTTILRALLRQDPDIIMVGEIRDQSTAEMAIKAAQTGHLVLST
LHTNSASSTLMRLYNLGIEKDLIHSCVSLIISQRLVRCLCPLCKICLPNKQHININKEMIEIPNWQAVGCQQCYSGYNGR
TAIYDCFEPLKQTLSSPYHLLYSGISLIKQGITTLEEVYQTLGDIE

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=442427 HG541_RS04635 WP_075670822.1 1058695..1059795(-) (pilB) [Proteus terrae subsp. cibarius strain HNCF43W]
ATGGATATCACACACTCTGCAACAGAATTTATTGAGCATCTATTACGTACAAGTATTTTAAAGCGTGTCTCTGATTTACA
TATAGAGCCACAGCAAATCAGTGTAAGAATTCGAGCCAGAATAGATAATCATTTATATCTATTTTCGCCACCTCCAAATG
AATTCTCTGAAGAAATAGTGACTCGCTTAAAGGTACTCGCTAACTTAAATATTGCAGAGAAGCGATTGCCTCAAGATGGG
CAGTTTAATTGGTCTTATCATGAAAAAAACTATTCAATACGAATTGCGACACTTCCCACATTATATGGCGAAAAAGTAGT
TTTACGGCTTATCAATAATTTACAACAACCGGAATTAAATCACCTGGGCTTTCAACCCTCACATTTAACGCTATTAAAAA
AATATTTAAATTTACCGCAAGGAATGATTTTAGTTACAGGGCCTACGGGAAGCGGAAAAACGCTCACACTATATAGTTGT
TTACGTTATTTAAATAAAGAAAACCTAAATATAAATAGTGTTGAAGATCCGGTTGAATTACCTCTAAAGGGTATTAATCA
GATCCAAATTTCCGAAAAATCAGGGATCTCATTCACAACAATATTACGGGCATTACTACGCCAAGATCCTGACATTATTA
TGGTAGGTGAAATACGAGATCAATCGACTGCTGAAATGGCAATAAAAGCTGCACAAACAGGGCATCTTGTATTATCAACC
TTACATACTAATTCGGCTTCATCCACATTAATGCGTCTATATAACTTAGGAATTGAAAAAGATCTTATTCACTCCTGTGT
TAGCTTAATTATTTCACAACGATTAGTTCGTTGTTTATGTCCACTCTGCAAAATATGTCTACCCAATAAACAGCATATAA
ATATAAACAAAGAAATGATCGAAATACCAAACTGGCAAGCTGTTGGTTGCCAGCAATGCTATTCAGGCTATAACGGAAGA
ACGGCTATTTATGACTGCTTTGAGCCCTTAAAACAAACTCTCTCATCCCCTTATCACTTACTCTATTCCGGCATTTCATT
AATTAAACAAGGAATAACGACACTTGAGGAGGTTTATCAAACACTAGGAGATATTGAATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(17-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Vibrio campbellii strain DS40M4

46.438

100

0.481
  pilB Legionella pneumophila strain ERS1305867

45.288

100

0.473
  pilB Vibrio parahaemolyticus RIMD 2210633

45

100

0.467
  pilB Vibrio cholerae strain A1552

43.421

100

0.451
  pilF Neisseria gonorrhoeae MS11

42.857

100

0.451
  pilB Acinetobacter baylyi ADP1

43.386

100

0.448
  pilB Acinetobacter baumannii D1279779

42.706

100

0.44
  pilB Glaesserella parasuis strain SC1401

42.466

99.727

0.423
  ctsE Campylobacter jejuni subsp. jejuni 81-176

39.467

100

0.404
  pilF Thermus thermophilus HB27

39.153

100

0.404
  pilB Haemophilus influenzae 86-028NP

40.608

98.907

0.402
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.889

100

0.402
  pilB/pilB1 Synechocystis sp. PCC 6803

37.436

100

0.399
  pilB Haemophilus influenzae Rd KW20

40.331

98.907

0.399