Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DBV21_RS03840 Genome accession   NZ_CP053029
Coordinates   865078..866295 (-) Length   405 a.a.
NCBI ID   WP_214349042.1    Uniprot ID   -
Organism   Pseudomonas congelans strain TLP2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 860078..871295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBV21_RS03810 (DBV21_04055) - 861504..862037 (-) 534 WP_003317783.1 MOSC domain-containing protein -
  DBV21_RS03815 (DBV21_04060) - 862034..862663 (-) 630 WP_122694368.1 DUF1780 domain-containing protein -
  DBV21_RS03820 (DBV21_04065) - 862790..863251 (+) 462 WP_010437859.1 hypothetical protein -
  DBV21_RS03825 (DBV21_04070) yacG 863378..863587 (-) 210 WP_002552020.1 DNA gyrase inhibitor YacG -
  DBV21_RS03830 (DBV21_04075) coaE 863584..864207 (-) 624 WP_010437862.1 dephospho-CoA kinase -
  DBV21_RS03835 (DBV21_04080) pilD 864204..865076 (-) 873 WP_096103540.1 prepilin peptidase Machinery gene
  DBV21_RS03840 (DBV21_04085) pilC 865078..866295 (-) 1218 WP_214349042.1 type II secretion system F family protein Machinery gene
  DBV21_RS03845 (DBV21_04090) pilB 866298..867992 (-) 1695 WP_214349045.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DBV21_RS03850 (DBV21_04095) - 868254..868652 (+) 399 WP_214351475.1 pilus assembly protein PilA -
  DBV21_RS03855 (DBV21_04100) - 868880..869425 (-) 546 WP_096124569.1 DUF1523 family protein -
  DBV21_RS03860 (DBV21_04105) - 869545..870543 (+) 999 WP_214349048.1 ATP-grasp domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44137.06 Da        Isoelectric Point: 10.1809

>NTDB_id=442260 DBV21_RS03840 WP_214349042.1 865078..866295(-) (pilC) [Pseudomonas congelans strain TLP2]
MASKAVKVSIYTWEGLDKKGGKLSGELSGHNPALIKAQLRKQGVNPTKVRKKSISIFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIISEGAENPNMRTLVVSLKQEVSAGNSFATALRQKPEHFDELFCNLVDAGEQAGALESLLDRVATYKEKT
EKLKAKIKKAMTYPTAVLVVAVIVSGILLIKVVPQFQTVFSSFGADLPLFTLMVIALSEFVQQWWLAILGLLFGGFFLFK
RAYKQSQKFRDSLDRFLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFRNAVHKVKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDSMLDKVATYYEDEVDNMVDSLTSLMEPMIMAVLGVIVGGLVIAMYLPIFK
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=442260 DBV21_RS03840 WP_214349042.1 865078..866295(-) (pilC) [Pseudomonas congelans strain TLP2]
ATGGCCAGCAAGGCAGTAAAAGTCAGCATTTATACTTGGGAAGGCCTGGACAAAAAGGGTGGAAAGCTAAGTGGAGAATT
GAGCGGCCACAACCCAGCGCTGATAAAAGCGCAACTGCGCAAGCAGGGCGTCAACCCGACCAAAGTACGTAAGAAGTCAA
TTTCTATATTTGGAAAAGGTAAGAAAATCAAGCCGCTGGACATAGCTTTCTTCTCAAGGCAGATGGCCACCATGATGAAA
GCCGGCGTACCTCTACTGCAATCGTTCGACATAATCAGTGAGGGTGCCGAGAACCCCAATATGCGAACGCTGGTGGTATC
GCTAAAGCAAGAAGTCTCAGCGGGGAACAGCTTCGCGACTGCCTTGCGACAAAAACCTGAACATTTTGATGAGCTGTTCT
GCAACCTCGTTGATGCAGGTGAACAGGCTGGCGCATTGGAAAGTCTTCTGGACAGGGTAGCAACGTACAAGGAAAAAACC
GAAAAGCTCAAGGCCAAGATCAAAAAAGCCATGACCTACCCTACTGCTGTTCTCGTGGTGGCGGTAATAGTTTCAGGTAT
TCTGCTAATCAAAGTGGTACCGCAATTTCAGACAGTATTTTCAAGCTTCGGTGCAGATTTACCTCTGTTTACACTGATGG
TGATTGCCCTTTCAGAGTTTGTGCAGCAGTGGTGGCTAGCTATTCTGGGACTACTATTTGGAGGCTTTTTTCTTTTCAAA
CGGGCCTACAAACAATCTCAGAAATTTCGCGACAGCCTGGACAGGTTCTTGTTAAAAGTCCCAATTATAGGCCCGCTTAT
CTTCAAATCATCAGTAGCCCGCTATGCGCGCACTCTTGCCACGACTTTCGCTGCTGGCGTACCGCTGGTCGAGGCGCTGG
ACTCGGTGGCCGGGGCGACGGGGAATGTGGTCTTTCGAAATGCAGTCCATAAAGTAAAGCAGGATGTCTCCACCGGCATG
CAATTAAATTTCTCGATGCGCTCCACAGGTGTATTTCCAAGTTTAGCGATCCAGATGACAGCCATCGGTGAAGAATCTGG
CGCGCTCGACTCCATGCTCGATAAAGTTGCAACCTACTACGAAGATGAAGTCGATAACATGGTTGATAGCTTAACCAGCC
TCATGGAACCGATGATCATGGCGGTGCTGGGTGTTATCGTCGGCGGCCTTGTGATTGCCATGTACCTCCCCATCTTCAAA
CTTGGAAGCGTTGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.321

100

0.743
  pilC Acinetobacter baumannii D1279779

60.149

99.753

0.6
  pilC Acinetobacter baylyi ADP1

59.314

100

0.598
  pilC Legionella pneumophila strain ERS1305867

53.03

97.778

0.519
  pilC Vibrio campbellii strain DS40M4

41.951

100

0.425
  pilG Neisseria gonorrhoeae MS11

41.935

99.506

0.417
  pilG Neisseria meningitidis 44/76-A

41.687

99.506

0.415
  pilC Vibrio cholerae strain A1552

40.741

100

0.407
  pilC Thermus thermophilus HB27

39.152

99.012

0.388