Detailed information NTG0442259

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DBV21_RS03835
• Genome accession: NZ_CP053029
• Coordinates: 864204..865076 (-)
• Length: 290 a.a.
• NCBI ID: WP_096103540.1
• Uniprot ID: -
• Organism: Pseudomonas congelans strain TLP2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 859204..870076

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DBV21_RS03805 (DBV21_04050)	-	859991..861289 (-)	1299	WP_214349039.1	NAD(P)/FAD-dependent oxidoreductase	-
DBV21_RS03810 (DBV21_04055)	-	861504..862037 (-)	534	WP_003317783.1	MOSC domain-containing protein	-
DBV21_RS03815 (DBV21_04060)	-	862034..862663 (-)	630	WP_122694368.1	DUF1780 domain-containing protein	-
DBV21_RS03820 (DBV21_04065)	-	862790..863251 (+)	462	WP_010437859.1	hypothetical protein	-
DBV21_RS03825 (DBV21_04070)	yacG	863378..863587 (-)	210	WP_002552020.1	DNA gyrase inhibitor YacG	-
DBV21_RS03830 (DBV21_04075)	coaE	863584..864207 (-)	624	WP_010437862.1	dephospho-CoA kinase	-
DBV21_RS03835 (DBV21_04080)	pilD	864204..865076 (-)	873	WP_096103540.1	prepilin peptidase	Machinery gene
DBV21_RS03840 (DBV21_04085)	pilC	865078..866295 (-)	1218	WP_214349042.1	type II secretion system F family protein	Machinery gene
DBV21_RS03845 (DBV21_04090)	pilB	866298..867992 (-)	1695	WP_214349045.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DBV21_RS03850 (DBV21_04095)	-	868254..868652 (+)	399	WP_214351475.1	pilus assembly protein PilA	-
DBV21_RS03855 (DBV21_04100)	-	868880..869425 (-)	546	WP_096124569.1	DUF1523 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32057.23 Da
• Isoelectric Point: 8.3734

>NTDB_id=442259 DBV21_RS03835 WP_096103540.1 864204..865076(-) (pilD) [Pseudomonas congelans strain TLP2]
MPLLDFLASSPLAFVTTCCILGLIIGSFLNVVVYRLPIMMERDWKAQSRELLGLPAEPDQPVFNLNRPRSSCPHCAHKIR
PWENLPVISYLLLRGKCSQCKAPISKRYPLVELTCALLSAYVAWHFGFGWQAAAMLVLSWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIVNAFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=442259 DBV21_RS03835 WP_096103540.1 864204..865076(-) (pilD) [Pseudomonas congelans strain TLP2]
ATGCCCCTCCTCGATTTCCTGGCCAGCTCCCCCCTGGCCTTCGTCACCACCTGCTGCATTCTCGGCCTGATCATCGGAAG
TTTCCTCAACGTGGTCGTCTACCGCCTCCCGATAATGATGGAGCGCGACTGGAAAGCCCAATCCCGAGAACTGCTCGGCC
TGCCCGCCGAACCCGATCAACCCGTGTTCAACCTGAACCGCCCCCGTTCGAGCTGCCCGCATTGCGCACACAAAATCCGC
CCGTGGGAGAACCTGCCGGTCATCAGCTATCTGCTGCTGCGCGGTAAATGTTCGCAGTGCAAAGCGCCGATCAGCAAACG
CTACCCGCTGGTCGAGCTGACCTGCGCGTTGTTGTCGGCATACGTGGCGTGGCATTTCGGTTTCGGCTGGCAGGCGGCGG
CGATGCTGGTACTGAGTTGGGGGCTGCTGGCGATGAGTCTGATCGATGCCGATCACCAGTTGCTCCCTGATTCTTTGGTG
CTGCCACTGCTGTGGCTGGGCCTGATCGTCAACGCTTTCGGGCTGTTCACCTCGCTGAACGATGCGCTATGGGGAGCGGT
GGCCGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGTTATGGCGACT
TCAAGTTGCTGGCAATGCTTGGCGCGTGGGGCGGCTGGCAGATTTTGCCGTTGACCATCCTGCTATCGTCGCTGGTGGGC
GCGGTGCTTGGGGTGATCATGATGCGTGTGCGCAGGGTGGAAAGCGGTACGCCGATCCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTACATGCAGTTTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.71	95.172	0.521
pilD	Vibrio campbellii strain DS40M4	52.297	97.586	0.51
pilD	Acinetobacter baumannii D1279779	51.056	97.931	0.5
pilD	Acinetobacter nosocomialis M2	50.352	97.931	0.493
pilD	Neisseria gonorrhoeae MS11	50.746	92.414	0.469