Detailed information NTG0044220

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: O3Y_RS13450
• Genome accession: NC_016944
• Coordinates: 2890340..2891347 (-)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae IEC224
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2885340..2896347

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O3Y_RS13425 (O3Y_12780)	rraA	2885915..2886430 (-)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-
O3Y_RS13430 (O3Y_12785)	-	2886505..2887422 (-)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
O3Y_RS13435 (O3Y_12790)	hslU	2887526..2888857 (-)	1332	WP_001293370.1	HslU--HslV peptidase ATPase subunit	-
O3Y_RS13440 (O3Y_12795)	hslV	2888923..2889480 (-)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
O3Y_RS13445	-	2889617..2890168 (-)	552	WP_001884022.1	SPOR domain-containing protein	-
O3Y_RS13450 (O3Y_12805)	cytR	2890340..2891347 (-)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
O3Y_RS13455 (O3Y_12810)	priA	2891653..2893857 (-)	2205	WP_001247858.1	primosomal protein N'	-
O3Y_RS13460 (O3Y_12815)	rpmE	2894112..2894330 (+)	219	WP_000643446.1	50S ribosomal protein L31	-
O3Y_RS13465 (O3Y_12820)	-	2894638..2895915 (+)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
O3Y_RS13470 (O3Y_12825)	metJ	2896026..2896343 (-)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=44220 O3Y_RS13450 WP_000224452.1 2890340..2891347(-) (cytR) [Vibrio cholerae IEC224]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=44220 O3Y_RS13450 WP_000224452.1 2890340..2891347(-) (cytR) [Vibrio cholerae IEC224]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904