Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   HKJ34_RS11595 Genome accession   NZ_CP052936
Coordinates   2397650..2398891 (-) Length   413 a.a.
NCBI ID   WP_049145821.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain CLP-C10     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2392650..2403891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKJ34_RS11580 (HKJ34_11735) - 2393922..2394572 (+) 651 WP_003574282.1 YigZ family protein -
  HKJ34_RS11585 (HKJ34_11740) rny 2394666..2396237 (-) 1572 WP_003657913.1 ribonuclease Y -
  HKJ34_RS11590 (HKJ34_11745) recA 2396532..2397593 (-) 1062 WP_003583962.1 recombinase RecA Machinery gene
  HKJ34_RS11595 (HKJ34_11750) cinA 2397650..2398891 (-) 1242 WP_049145821.1 competence/damage-inducible protein A Machinery gene
  HKJ34_RS11600 (HKJ34_11760) pgsA 2399309..2399902 (-) 594 WP_003569518.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HKJ34_RS11605 (HKJ34_11765) - 2399899..2400828 (-) 930 WP_003569516.1 helix-turn-helix domain-containing protein -
  HKJ34_RS11610 (HKJ34_11770) ymfI 2400915..2401643 (-) 729 WP_003569514.1 elongation factor P 5-aminopentanone reductase -
  HKJ34_RS11615 (HKJ34_11775) yfmH 2401643..2402935 (-) 1293 WP_003583955.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44206.54 Da        Isoelectric Point: 6.0028

>NTDB_id=442059 HKJ34_RS11595 WP_049145821.1 2397650..2398891(-) (cinA) [Lacticaseibacillus paracasei strain CLP-C10]
MQAEIIAVGTEILMGQITNTNGAYMAKQLTALGIDSYHQQVVGDNGPRLEEAIKLAESRSNLVILIGGLGPTPDDLTKQT
LAAHLNRKLVEDPDAMAKLQARAKQQQRPMTPNNQLQAMYPEGADILVNRVGLAVGAWIVNGQHTYVLLPGPPKELVPMV
DHELLPRLAKWSGHAEVMVSRVLRFFGIGESQLVTDLDDLIANQTDPTIATYIKDHEVTVRVTASGATEKDADAKLEPMV
GAIMDRDGQYFYGYGDDNSLAKELVKTLAANDMQITAAESLTAGAFQAALGDVPGVSAYFKGGFVTYSLATKAAFLAIDA
RELAAHGVVSAFTAKAMAEHARRKAAADISVSFTGVAGPDTLEGQPAGTVWIGLARRGQLPEAHVYHFPGGRNDVRQRAV
MTGMMLALRALQA

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=442059 HKJ34_RS11595 WP_049145821.1 2397650..2398891(-) (cinA) [Lacticaseibacillus paracasei strain CLP-C10]
ATGCAAGCAGAGATTATTGCTGTCGGGACAGAGATCCTGATGGGACAGATTACTAACACAAATGGTGCCTATATGGCTAA
GCAACTGACAGCACTGGGTATTGATAGCTACCATCAACAGGTGGTGGGAGACAACGGTCCGCGACTTGAGGAGGCCATTA
AGTTGGCGGAAAGTCGCAGTAATTTAGTTATTTTGATTGGCGGGTTAGGACCGACACCAGATGATCTGACCAAGCAAACA
TTGGCAGCGCACTTGAACCGCAAATTGGTTGAAGATCCTGACGCTATGGCTAAATTACAGGCGCGCGCCAAGCAACAGCA
GCGGCCAATGACGCCTAATAATCAATTACAGGCCATGTATCCGGAAGGCGCCGATATTTTGGTCAATCGGGTTGGTTTAG
CGGTTGGTGCGTGGATCGTCAATGGGCAGCACACCTATGTCTTATTGCCGGGACCACCCAAGGAACTCGTTCCGATGGTT
GATCATGAACTGCTGCCGCGGCTAGCAAAATGGAGCGGCCACGCGGAAGTTATGGTCAGCCGGGTCTTACGTTTCTTTGG
CATTGGCGAATCGCAACTAGTGACAGATCTGGACGACTTGATTGCCAACCAAACCGATCCGACCATTGCAACTTATATCA
AGGATCATGAGGTGACGGTGCGCGTCACTGCCAGTGGCGCTACCGAAAAAGACGCTGATGCAAAGTTAGAACCAATGGTC
GGTGCCATCATGGATCGTGATGGTCAATATTTTTACGGCTACGGTGACGACAATAGTTTGGCAAAAGAGCTTGTGAAGAC
GCTTGCAGCAAATGATATGCAAATTACTGCAGCTGAGAGTTTGACTGCCGGTGCATTTCAAGCAGCGTTAGGCGATGTGC
CAGGGGTATCGGCTTATTTTAAGGGCGGTTTTGTCACGTACTCACTTGCAACAAAGGCCGCTTTTTTGGCAATTGATGCT
CGCGAATTAGCGGCACACGGAGTTGTCAGCGCATTTACAGCCAAGGCGATGGCTGAACATGCTCGGCGTAAGGCAGCGGC
GGATATAAGTGTCAGCTTTACCGGCGTTGCCGGTCCAGACACGCTGGAAGGACAGCCTGCTGGTACGGTTTGGATCGGTT
TAGCGCGGCGCGGCCAACTGCCTGAAGCACATGTTTACCATTTTCCTGGTGGTCGCAATGATGTCCGGCAGCGTGCTGTG
ATGACTGGTATGATGCTTGCATTAAGGGCGCTGCAGGCCTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

51.887

100

0.533
  cinA Streptococcus pneumoniae TIGR4

51.651

100

0.53
  cinA Streptococcus mitis SK321

51.773

100

0.53
  cinA Streptococcus mutans UA159

52.415

100

0.525
  cinA Streptococcus pneumoniae Rx1

51.185

100

0.523
  cinA Streptococcus pneumoniae R6

51.185

100

0.523
  cinA Streptococcus pneumoniae D39

50.948

100

0.521
  cinA Bacillus subtilis subsp. subtilis str. 168

45.255

99.516

0.45
  cinA Streptococcus suis isolate S10

42.593

91.525

0.39