Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HKK60_RS04890 Genome accession   NZ_CP052863
Coordinates   1093802..1095061 (-) Length   419 a.a.
NCBI ID   WP_012481099.1    Uniprot ID   B2FRS9
Organism   Stenotrophomonas maltophilia strain CF13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1088802..1100061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK60_RS04865 (HKK60_04865) - 1089172..1089849 (+) 678 WP_005410804.1 response regulator transcription factor -
  HKK60_RS04870 (HKK60_04870) - 1089812..1091179 (+) 1368 WP_043034309.1 HAMP domain-containing sensor histidine kinase -
  HKK60_RS04875 (HKK60_04875) - 1091662..1092048 (+) 387 WP_005410802.1 hypothetical protein -
  HKK60_RS04880 (HKK60_04880) coaE 1092308..1092919 (-) 612 WP_049451232.1 dephospho-CoA kinase -
  HKK60_RS04885 (HKK60_04885) - 1092931..1093794 (-) 864 WP_049451231.1 A24 family peptidase -
  HKK60_RS04890 (HKK60_04890) pilC 1093802..1095061 (-) 1260 WP_012481099.1 type II secretion system F family protein Machinery gene
  HKK60_RS04895 (HKK60_04895) - 1095414..1095836 (+) 423 WP_088436224.1 pilin -
  HKK60_RS04900 (HKK60_04900) - 1095988..1096395 (+) 408 WP_088436223.1 pilin -
  HKK60_RS04905 (HKK60_04905) pilB 1096618..1098351 (+) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HKK60_RS04910 (HKK60_04910) pilR 1098477..1099850 (-) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45846.28 Da        Isoelectric Point: 10.1071

>NTDB_id=441934 HKK60_RS04890 WP_012481099.1 1093802..1095061(-) (pilC) [Stenotrophomonas maltophilia strain CF13]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKSKPLFGAAGSPVKPKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQMVVNLSRFMVSWWWL
MLLIAIGAAVGAIMAYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=441934 HKK60_RS04890 WP_012481099.1 1093802..1095061(-) (pilC) [Stenotrophomonas maltophilia strain CF13]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGCGCCACCATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGCC
AGGGCATCAACCCGGGCCAGGTCAAGCCCAAGTCGAAGCCGCTGTTCGGCGCCGCCGGCAGCCCGGTCAAGCCCAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTGTCGGCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGCTGGTCGACACCATCCGCACCGACATCGAGGGCGGTTCCTCGATGTACGAGG
CGGTCAGTAAGCACCCGGTGCAGTTCGATGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAAGGCGCCGGCGTGCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAGAACATCGAAGCGCTGAAGGGCAAGATCAAGAAAGCGCTGTTCTACCC
GATCATGGTGGTGGTGGTGGCGATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTCCCGCAGTTCGAGGACGTGTTCA
AGAGCTTTGGTGCCGAGCTGCCCGCCTTCACCCAGATGGTGGTGAACCTGTCACGGTTCATGGTGTCGTGGTGGTGGCTG
ATGCTGCTCATCGCGATCGGTGCCGCAGTCGGCGCGATCATGGCCTACAAGCGCTCGCCGAAGATGCAGCATGCGATGGA
CCGGTTCGTGCTGAAGGTACCGGTGATCGGGCAGATCATGCATAACAGCGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TGACCTTCAAGGCCGGCGTACCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGTGCTACCGGCAACACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTTTCGGTCGGTTACCCGGTGAACATGTCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCTGGTGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2FRS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.303

94.511

0.523
  pilC Acinetobacter baylyi ADP1

51.597

97.136

0.501
  pilC Legionella pneumophila strain ERS1305867

52.13

95.227

0.496
  pilC Acinetobacter baumannii D1279779

49.877

97.136

0.484
  pilG Neisseria gonorrhoeae MS11

45.137

95.704

0.432
  pilG Neisseria meningitidis 44/76-A

44.888

95.704

0.43
  pilC Vibrio cholerae strain A1552

42.118

96.897

0.408
  pilC Vibrio campbellii strain DS40M4

41.646

95.704

0.399
  pilC Thermus thermophilus HB27

38.06

95.943

0.365