Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HKK60_RS04910 Genome accession   NZ_CP052863
Coordinates   1098477..1099850 (-) Length   457 a.a.
NCBI ID   WP_005410795.1    Uniprot ID   A0A854E393
Organism   Stenotrophomonas maltophilia strain CF13     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1093477..1104850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK60_RS04890 (HKK60_04890) pilC 1093802..1095061 (-) 1260 WP_012481099.1 type II secretion system F family protein Machinery gene
  HKK60_RS04895 (HKK60_04895) - 1095414..1095836 (+) 423 WP_088436224.1 pilin -
  HKK60_RS04900 (HKK60_04900) - 1095988..1096395 (+) 408 WP_088436223.1 pilin -
  HKK60_RS04905 (HKK60_04905) pilB 1096618..1098351 (+) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HKK60_RS04910 (HKK60_04910) pilR 1098477..1099850 (-) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  HKK60_RS04915 (HKK60_04915) - 1099911..1101524 (-) 1614 WP_169448196.1 ATP-binding protein -
  HKK60_RS04920 (HKK60_04920) sucC 1101882..1103051 (+) 1170 WP_004154430.1 ADP-forming succinate--CoA ligase subunit beta -
  HKK60_RS04925 (HKK60_04925) sucD 1103073..1103948 (+) 876 WP_005410793.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49515.76 Da        Isoelectric Point: 6.4407

>NTDB_id=441936 HKK60_RS04910 WP_005410795.1 1098477..1099850(-) (pilR) [Stenotrophomonas maltophilia strain CF13]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNAERPAPGPNAEQGGRLLGHSQAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRAPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=441936 HKK60_RS04910 WP_005410795.1 1098477..1099850(-) (pilR) [Stenotrophomonas maltophilia strain CF13]
ATGAATGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAGGCACGTGAGCTGCTGGCCAGCAATCCGTACGATCTGTGCATCA
CCGACATGCGCCTGCCCGATGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCATTCGGCAGCATGGATCTCGCCGTGGAGGCGCTGAAGGCCGGTGCGTTCGATTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGACTGGTCAAGCACGCGCTGGAACTCAACAACGCCGAGCGCCCCGCACCGGGCCCCAACG
CCGAACAGGGCGGGCGCCTGCTGGGCCACTCGCAGGCCATGGATGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAGTCGGGCGTCGGCAAGGAGCTGGTCGCACGCACCATCCATGCCCAGGGCGCGCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCA
AGGGCAGTTTCAGCGGCGCGCACGCTGACAAGCCTGGCCTGTTCCAGGCTGCGCACGGCGGCACTCTGTTCCTGGACGAA
GTGGCTGAACTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCGCGGTGGGCGCGGC
CAACGAGGAGCCGGTGGATGTCCGCATCCTCTCGGCCACCCATAAGGACCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCACTGCGCGAACGCCGCCAGGACCTGCCCGAA
CTGGCCGCCGCCGTGCTGGCCCGCCTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCCTCGGCGCTGGAAGC
ACTGGCGCAGTACGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATCCTGGAACGTGCGCTGGCCCTGGCCGAAGAAG
ACTGCATCGGCGCCGATGACCTGCGCCTGCCACAGCACGCGCCGCGTGCACCTGGCAGTGCCGCGCCCGCCGAAGCGGTG
GCCGACCTGCAGCCGGGCAGCGCCGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCAGCGCCATCCAGCGTGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(414-454)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A854E393

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.656

99.344

0.632
  pilR Acinetobacter baumannii strain A118

48.38

100

0.49
  luxO Vibrio cholerae strain A1552

37.079

97.374

0.361