Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HKK54_RS05560 Genome accession   NZ_CP052860
Coordinates   1175853..1177061 (+) Length   402 a.a.
NCBI ID   WP_169386329.1    Uniprot ID   -
Organism   Pseudomonas sp. ADAK13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1170853..1182061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK54_RS05535 (HKK54_05535) nadC 1172164..1173012 (+) 849 WP_010175009.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HKK54_RS05540 (HKK54_05540) - 1173189..1173494 (-) 306 WP_010175007.1 DUF6388 family protein -
  HKK54_RS05550 (HKK54_05550) - 1173743..1175152 (-) 1410 WP_010175005.1 O-antigen ligase family protein -
  HKK54_RS05555 (HKK54_05555) - 1175239..1175652 (-) 414 WP_169389249.1 pilin -
  HKK54_RS05560 (HKK54_05560) pilC 1175853..1177061 (+) 1209 WP_169386329.1 type II secretion system F family protein Machinery gene
  HKK54_RS05565 (HKK54_05565) pilD 1177070..1177936 (+) 867 WP_169389250.1 A24 family peptidase Machinery gene
  HKK54_RS05570 (HKK54_05570) coaE 1177933..1178556 (+) 624 WP_010174998.1 dephospho-CoA kinase -
  HKK54_RS05575 (HKK54_05575) yacG 1178553..1178753 (+) 201 WP_010174995.1 DNA gyrase inhibitor YacG -
  HKK54_RS05580 (HKK54_05580) - 1178750..1178965 (-) 216 WP_003215917.1 hypothetical protein -
  HKK54_RS05585 (HKK54_05585) - 1179031..1179720 (-) 690 WP_010174991.1 energy-coupling factor ABC transporter permease -
  HKK54_RS05590 (HKK54_05590) - 1179717..1180184 (-) 468 WP_169386330.1 FAD/FMN-containing dehydrogenase -
  HKK54_RS05595 (HKK54_05595) - 1180287..1180916 (+) 630 WP_008437312.1 DUF1780 domain-containing protein -
  HKK54_RS05600 (HKK54_05600) - 1181006..1181179 (+) 174 WP_010174986.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43017.26 Da        Isoelectric Point: 9.8634

>NTDB_id=441855 HKK54_RS05560 WP_169386329.1 1175853..1177061(+) (pilC) [Pseudomonas sp. ADAK13]
MNDVSAIYAWEGVNRKGRKVSGETSGHNPALIKALLRQQGISPGRVRKKFTGWPSLATPVKPAEIALFTRQLATLLKAGI
ALLQALDIIAEGVDNPHLRALVQGLKQEIAAGSSLTAALQKQPRYFDELYCNLIAAGEQAGALEALLERVAIHLEKSQQL
KAKIKKAMTYPMTVLAVTTLVSAILLIHVVPQFQGLFAGVDAELPGFTLGVISLSEFMRHNGWVLILVAGTSFSGLRKAY
RSSTGFRHWLDASLLKAPVAGTLLKKSAVARYARTLSTTFAAGVPLVQALDSVAGATGNGLFKQAINRMRHDVSTGTQLN
ESMAVSGLFPGMAIQMTAIGEESGTLDHMLEKVASHYEADVDHLVDNLTSLMEPLIMVVLGGIVGALVLAMYLPIFQLGT
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=441855 HKK54_RS05560 WP_169386329.1 1175853..1177061(+) (pilC) [Pseudomonas sp. ADAK13]
ATGAATGATGTTTCAGCGATCTATGCCTGGGAAGGCGTCAACCGCAAAGGGCGCAAAGTGTCTGGGGAAACCAGCGGCCA
TAATCCTGCGTTGATCAAGGCGCTATTGCGCCAACAAGGGATCAGCCCCGGGCGTGTACGGAAAAAATTCACCGGCTGGC
CGAGCCTGGCTACGCCAGTCAAGCCGGCAGAGATCGCCCTCTTCACTCGCCAACTGGCAACGCTGCTAAAGGCCGGCATC
GCGCTTTTGCAGGCACTGGACATCATCGCCGAAGGCGTCGATAACCCGCACCTGCGTGCCCTGGTTCAGGGCTTGAAACA
GGAGATCGCCGCCGGCAGCAGCCTGACCGCCGCCTTGCAGAAACAGCCACGTTACTTCGATGAGCTGTACTGCAACCTGA
TTGCAGCGGGTGAGCAGGCGGGCGCACTCGAGGCACTGCTGGAACGGGTCGCCATTCACCTGGAAAAAAGCCAACAGTTG
AAAGCCAAAATCAAAAAGGCCATGACCTATCCCATGACCGTTCTGGCAGTCACCACCCTGGTCAGTGCGATCTTGCTGAT
TCACGTCGTGCCGCAGTTCCAGGGGCTGTTTGCCGGCGTCGATGCCGAGTTGCCGGGCTTTACCCTCGGGGTCATCAGCC
TGTCGGAGTTCATGCGGCATAACGGCTGGGTGCTGATCCTGGTCGCTGGCACCAGTTTTTCGGGCCTGCGCAAAGCCTAT
CGCTCATCGACAGGCTTTCGTCACTGGCTCGATGCCAGTTTGTTGAAAGCACCCGTGGCAGGCACACTGCTGAAAAAATC
GGCGGTCGCCCGCTACGCCCGCACGCTCTCGACGACCTTTGCTGCGGGCGTACCGCTGGTGCAAGCACTGGATTCAGTGG
CAGGCGCCACGGGGAATGGGCTGTTCAAACAGGCAATCAATCGTATGCGCCACGACGTATCAACCGGAACCCAACTGAAT
GAATCCATGGCTGTCAGCGGCCTGTTTCCCGGCATGGCGATCCAGATGACCGCCATCGGCGAGGAGTCGGGCACGCTCGA
CCATATGCTGGAAAAAGTCGCCAGCCATTACGAGGCAGACGTCGACCACCTGGTGGACAACCTCACCAGCCTGATGGAGC
CGCTGATCATGGTGGTACTGGGGGGCATCGTCGGGGCTTTGGTGCTCGCCATGTACCTGCCGATCTTTCAGCTCGGTACG
GCCTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59

99.502

0.587
  pilC Acinetobacter baylyi ADP1

53.865

99.751

0.537
  pilC Acinetobacter baumannii D1279779

50.886

98.259

0.5
  pilC Legionella pneumophila strain ERS1305867

47.595

98.259

0.468
  pilG Neisseria gonorrhoeae MS11

40.609

98.01

0.398
  pilG Neisseria meningitidis 44/76-A

39.848

98.01

0.391
  pilC Vibrio cholerae strain A1552

38.265

97.512

0.373
  pilC Vibrio campbellii strain DS40M4

37.688

99.005

0.373
  pilC Thermus thermophilus HB27

36.591

99.254

0.363