Detailed information NTG0441856

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HKK54_RS05565
• Genome accession: NZ_CP052860
• Coordinates: 1177070..1177936 (+)
• Length: 288 a.a.
• NCBI ID: WP_169389250.1
• Uniprot ID: -
• Organism: Pseudomonas sp. ADAK13
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1172070..1182936

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HKK54_RS05535 (HKK54_05535)	nadC	1172164..1173012 (+)	849	WP_010175009.1	carboxylating nicotinate-nucleotide diphosphorylase	-
HKK54_RS05540 (HKK54_05540)	-	1173189..1173494 (-)	306	WP_010175007.1	DUF6388 family protein	-
HKK54_RS05550 (HKK54_05550)	-	1173743..1175152 (-)	1410	WP_010175005.1	O-antigen ligase family protein	-
HKK54_RS05555 (HKK54_05555)	-	1175239..1175652 (-)	414	WP_169389249.1	pilin	-
HKK54_RS05560 (HKK54_05560)	pilC	1175853..1177061 (+)	1209	WP_169386329.1	type II secretion system F family protein	Machinery gene
HKK54_RS05565 (HKK54_05565)	pilD	1177070..1177936 (+)	867	WP_169389250.1	A24 family peptidase	Machinery gene
HKK54_RS05570 (HKK54_05570)	coaE	1177933..1178556 (+)	624	WP_010174998.1	dephospho-CoA kinase	-
HKK54_RS05575 (HKK54_05575)	yacG	1178553..1178753 (+)	201	WP_010174995.1	DNA gyrase inhibitor YacG	-
HKK54_RS05580 (HKK54_05580)	-	1178750..1178965 (-)	216	WP_003215917.1	hypothetical protein	-
HKK54_RS05585 (HKK54_05585)	-	1179031..1179720 (-)	690	WP_010174991.1	energy-coupling factor ABC transporter permease	-
HKK54_RS05590 (HKK54_05590)	-	1179717..1180184 (-)	468	WP_169386330.1	FAD/FMN-containing dehydrogenase	-
HKK54_RS05595 (HKK54_05595)	-	1180287..1180916 (+)	630	WP_008437312.1	DUF1780 domain-containing protein	-
HKK54_RS05600 (HKK54_05600)	-	1181006..1181179 (+)	174	WP_010174986.1	DUF3094 family protein	-
HKK54_RS05605 (HKK54_05605)	-	1181240..1182538 (+)	1299	WP_169386331.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31594.65 Da
• Isoelectric Point: 8.2382

>NTDB_id=441856 HKK54_RS05565 WP_169389250.1 1177070..1177936(+) (pilD) [Pseudomonas sp. ADAK13]
MTEILVYQPWVFVSGALVLGLIVGSFMNVLVWRLPKMLEREWRAQAHEVLGLPAEPAAAPYNLMRPNSCCPNCSHPIRPR
ENIPLVSYLLLRGRCSSCHQPIGVRYPFTELACGLISAVVAWHFGFGWAAGAVMVLSWGLLAMSLIDVDHQLLPDALVLP
LLWMGLILNSVGVFVSLPDALWGAVAGYTSLWSVFWLFKLITGKDGMGYGDFKLLAMLGAWGGWQILPMTLLLSSLVGVI
GGLVLLRLRKAQASTPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=441856 HKK54_RS05565 WP_169389250.1 1177070..1177936(+) (pilD) [Pseudomonas sp. ADAK13]
CTGACTGAAATACTTGTTTATCAGCCCTGGGTGTTTGTATCAGGCGCACTGGTGCTGGGGCTTATTGTCGGCAGCTTTAT
GAACGTGCTGGTGTGGCGCCTGCCAAAGATGCTGGAGCGTGAATGGCGAGCCCAGGCCCATGAAGTCCTTGGCCTTCCCG
CCGAGCCCGCTGCCGCCCCCTATAACCTGATGCGGCCCAACTCCTGCTGCCCGAACTGCAGCCACCCGATTCGCCCCCGG
GAGAATATTCCGCTCGTCAGCTATTTGCTGCTCAGGGGGCGCTGCTCAAGTTGCCATCAACCTATCGGCGTGCGGTACCC
CTTCACCGAATTGGCGTGCGGGTTGATCTCTGCGGTTGTCGCCTGGCATTTCGGTTTTGGCTGGGCAGCCGGTGCGGTGA
TGGTGTTGAGTTGGGGACTGCTGGCGATGAGCCTGATCGATGTCGATCACCAACTGCTGCCGGACGCGCTGGTGCTGCCG
TTGCTGTGGATGGGGCTGATCCTCAACAGTGTTGGCGTTTTTGTGTCATTGCCCGATGCGCTCTGGGGTGCGGTAGCCGG
CTACACGAGCCTGTGGTCGGTGTTCTGGTTGTTCAAGCTGATTACCGGCAAGGACGGTATGGGTTACGGTGATTTCAAGT
TACTCGCAATGCTCGGCGCCTGGGGCGGCTGGCAAATTCTGCCGATGACGCTGTTGCTGTCATCCCTGGTGGGCGTGATC
GGTGGCCTGGTTCTATTGCGCCTGCGCAAAGCCCAAGCCTCCACTCCAATGCCTTTTGGTCCGTATCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.93	98.611	0.542
pilD	Vibrio campbellii strain DS40M4	52.982	98.958	0.524
pilD	Acinetobacter baumannii D1279779	48.175	95.139	0.458
pilD	Acinetobacter nosocomialis M2	48.175	95.139	0.458
pilD	Neisseria gonorrhoeae MS11	48.148	93.75	0.451