Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HKK55_RS20940 Genome accession   NZ_CP052859
Coordinates   4641739..4642947 (+) Length   402 a.a.
NCBI ID   WP_169356409.1    Uniprot ID   A0A7Z2XF04
Organism   Pseudomonas sp. ADAK18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4636739..4647947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK55_RS20915 (HKK55_20915) nadC 4638097..4638945 (+) 849 WP_169356406.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HKK55_RS20920 (HKK55_20920) - 4638991..4639296 (-) 306 WP_169356407.1 DUF6388 family protein -
  HKK55_RS20930 (HKK55_20930) - 4639545..4640963 (-) 1419 WP_169356408.1 O-antigen ligase -
  HKK55_RS20935 (HKK55_20935) - 4641064..4641477 (-) 414 WP_169357915.1 pilin -
  HKK55_RS20940 (HKK55_20940) pilC 4641739..4642947 (+) 1209 WP_169356409.1 type II secretion system F family protein Machinery gene
  HKK55_RS20945 (HKK55_20945) pilD 4642956..4643822 (+) 867 WP_272902591.1 A24 family peptidase Machinery gene
  HKK55_RS20950 (HKK55_20950) coaE 4643819..4644442 (+) 624 WP_169356410.1 dephospho-CoA kinase -
  HKK55_RS20955 (HKK55_20955) yacG 4644439..4644642 (+) 204 WP_169356411.1 DNA gyrase inhibitor YacG -
  HKK55_RS20960 (HKK55_20960) - 4644639..4644854 (-) 216 WP_169356412.1 hypothetical protein -
  HKK55_RS20965 (HKK55_20965) - 4644919..4645608 (-) 690 WP_169356413.1 energy-coupling factor ABC transporter permease -
  HKK55_RS20970 (HKK55_20970) - 4645605..4646072 (-) 468 WP_169356414.1 FAD/FMN-containing dehydrogenase -
  HKK55_RS20975 (HKK55_20975) metC 4646242..4647393 (-) 1152 Protein_4144 cystathionine beta-lyase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43456.93 Da        Isoelectric Point: 9.9830

>NTDB_id=441838 HKK55_RS20940 WP_169356409.1 4641739..4642947(+) (pilC) [Pseudomonas sp. ADAK18]
MTEASVIYAWEGTNRKGRKVSGETRGHTPTLIKVQLRQQGINPGRVWKKSRTLSSLRRPVKAGDIALFTRQLATLLKAGI
PLLQAFDIITEGFDNRHMQALIQGLKQEIAAGSSLAAALQKQPHYFDDLYCHLIAAGEQAGALETLLERVAIHLEKSEQL
KARIKKAMTYPLAVLMVAAIVSAILLIHVVPQFQGLFAGVDAELPGFTLMVIALSEFMQHAWWALAIGLGASALGLRKAY
RLSPDFRHRIDTGLLKMPLAGTLLKKSAVARYARTLSTTFAAGVPLVQALDSVAGAAGNGLFKQAINRMRQDVSTGMQLN
QTMAISGLFPGMAIQMTAIGEESGTLDSMLEKVASHYEADVDNQVDNLTSLMEPLIMVVLGGIVGALVVAMYLPIFQLGT
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=441838 HKK55_RS20940 WP_169356409.1 4641739..4642947(+) (pilC) [Pseudomonas sp. ADAK18]
ATGACCGAAGCTTCAGTGATCTATGCTTGGGAAGGCACCAACCGCAAAGGTCGCAAAGTGTCCGGAGAAACACGTGGACA
CACGCCGACGCTGATCAAGGTGCAGTTGCGCCAGCAGGGGATCAACCCCGGTCGGGTATGGAAAAAGTCCCGCACCTTGT
CGAGCTTGCGCCGGCCAGTCAAAGCGGGCGATATCGCCTTGTTTACCCGCCAATTGGCAACCCTGCTGAAGGCTGGAATC
CCCTTACTGCAGGCATTCGACATCATCACTGAGGGCTTTGATAACCGGCACATGCAGGCGCTGATACAAGGCTTGAAACA
AGAGATCGCGGCAGGCAGCAGCCTGGCCGCAGCACTGCAGAAACAGCCACACTATTTCGATGATTTGTACTGCCACTTGA
TCGCAGCAGGCGAACAGGCCGGCGCACTGGAAACGCTGCTGGAGCGCGTGGCCATTCATCTCGAAAAGAGCGAACAGCTC
AAGGCCAGAATCAAGAAGGCTATGACCTATCCACTGGCGGTGCTGATGGTTGCCGCCATTGTCAGCGCGATCCTGCTGAT
TCACGTTGTGCCGCAGTTCCAGGGACTATTTGCCGGAGTCGATGCCGAACTTCCGGGGTTTACCTTGATGGTCATCGCCC
TGTCGGAGTTCATGCAGCACGCGTGGTGGGCGTTGGCCATAGGCCTGGGCGCCAGTGCTCTCGGACTGCGCAAGGCTTAC
CGGCTCTCGCCCGACTTTCGTCATCGGATCGATACGGGTTTGTTGAAAATGCCACTGGCAGGCACACTGCTGAAAAAGTC
GGCTGTCGCCCGCTATGCCCGAACGCTCTCGACCACGTTCGCAGCTGGCGTGCCGCTGGTGCAGGCGCTGGATTCGGTGG
CCGGCGCCGCTGGAAATGGACTGTTCAAACAGGCGATCAATCGTATGCGTCAGGACGTATCAACAGGCATGCAGCTGAAT
CAAACCATGGCCATCAGCGGCCTCTTTCCGGGTATGGCCATTCAGATGACCGCGATTGGCGAAGAGTCGGGCACTCTCGA
CAGCATGCTGGAGAAAGTCGCCAGCCACTATGAAGCGGATGTCGACAATCAGGTCGACAACCTCACCAGCCTGATGGAGC
CACTGATCATGGTGGTACTTGGGGGTATTGTCGGGGCACTGGTGGTCGCCATGTACCTGCCGATCTTCCAGCTCGGTACA
GCGTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2XF04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60.914

98.01

0.597
  pilC Acinetobacter baylyi ADP1

51.621

99.751

0.515
  pilC Acinetobacter baumannii D1279779

51.899

98.259

0.51
  pilC Legionella pneumophila strain ERS1305867

48.608

98.259

0.478
  pilG Neisseria gonorrhoeae MS11

41.878

98.01

0.41
  pilG Neisseria meningitidis 44/76-A

41.117

98.01

0.403
  pilC Vibrio cholerae strain A1552

41.221

97.761

0.403
  pilC Vibrio campbellii strain DS40M4

40.102

98.01

0.393
  pilC Thermus thermophilus HB27

36.341

99.254

0.361