Detailed information NTG0441839

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HKK55_RS20945
• Genome accession: NZ_CP052859
• Coordinates: 4642956..4643822 (+)
• Length: 288 a.a.
• NCBI ID: WP_272902591.1
• Uniprot ID: -
• Organism: Pseudomonas sp. ADAK18
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4637956..4648822

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HKK55_RS20915 (HKK55_20915)	nadC	4638097..4638945 (+)	849	WP_169356406.1	carboxylating nicotinate-nucleotide diphosphorylase	-
HKK55_RS20920 (HKK55_20920)	-	4638991..4639296 (-)	306	WP_169356407.1	DUF6388 family protein	-
HKK55_RS20930 (HKK55_20930)	-	4639545..4640963 (-)	1419	WP_169356408.1	O-antigen ligase	-
HKK55_RS20935 (HKK55_20935)	-	4641064..4641477 (-)	414	WP_169357915.1	pilin	-
HKK55_RS20940 (HKK55_20940)	pilC	4641739..4642947 (+)	1209	WP_169356409.1	type II secretion system F family protein	Machinery gene
HKK55_RS20945 (HKK55_20945)	pilD	4642956..4643822 (+)	867	WP_272902591.1	A24 family peptidase	Machinery gene
HKK55_RS20950 (HKK55_20950)	coaE	4643819..4644442 (+)	624	WP_169356410.1	dephospho-CoA kinase	-
HKK55_RS20955 (HKK55_20955)	yacG	4644439..4644642 (+)	204	WP_169356411.1	DNA gyrase inhibitor YacG	-
HKK55_RS20960 (HKK55_20960)	-	4644639..4644854 (-)	216	WP_169356412.1	hypothetical protein	-
HKK55_RS20965 (HKK55_20965)	-	4644919..4645608 (-)	690	WP_169356413.1	energy-coupling factor ABC transporter permease	-
HKK55_RS20970 (HKK55_20970)	-	4645605..4646072 (-)	468	WP_169356414.1	FAD/FMN-containing dehydrogenase	-
HKK55_RS20975 (HKK55_20975)	metC	4646242..4647393 (-)	1152	Protein_4144	cystathionine beta-lyase	-
HKK55_RS20980 (HKK55_20980)	-	4647393..4648640 (-)	1248	WP_169356416.1	MFS transporter	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32108.25 Da
• Isoelectric Point: 7.3640

>NTDB_id=441839 HKK55_RS20945 WP_272902591.1 4642956..4643822(+) (pilD) [Pseudomonas sp. ADAK18]
MSDMLAQQPWLFMWGALLLGLIVGSFLNVLVWRLPKMLTREWRAQAHDILELPAEPKGPTYNLLLPHSCCPHCAQPIRPW
ENIPLFSYLLLKGRCSHCHDPISPRYPLTELACGLVSAYVAWHFGFGWQAGWVMLLSWGLLAMSLIDVDHQLLPDVLVLP
LLWLGLILNQFGLFVAPADALWGAVAGYLSLWSVFWLFKLITGKDGMGYGDFKLLALLGAWGGWQILPMTLLLSSLVGAI
SGLILLRLRNAQTSVPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFK

Nucleotide

• Length: 867 bp

>NTDB_id=441839 HKK55_RS20945 WP_272902591.1 4642956..4643822(+) (pilD) [Pseudomonas sp. ADAK18]
TTGAGTGACATGCTGGCCCAGCAGCCATGGCTGTTCATGTGGGGCGCGCTGCTGCTTGGCCTGATCGTCGGCAGTTTTCT
CAATGTCCTGGTATGGCGCCTGCCAAAAATGCTGACGCGGGAATGGCGCGCCCAGGCCCATGACATCCTCGAACTCCCTG
CGGAACCGAAAGGCCCGACCTACAACCTGCTGCTGCCTCACTCTTGCTGCCCTCACTGCGCGCAGCCGATTCGACCATGG
GAAAATATCCCACTGTTCAGTTATCTGCTGCTCAAGGGACGCTGCTCCCATTGCCATGACCCCATCAGCCCGCGCTACCC
GCTTACGGAGTTGGCGTGTGGACTGGTCTCGGCGTACGTCGCCTGGCATTTCGGCTTCGGCTGGCAGGCCGGCTGGGTCA
TGCTATTGAGTTGGGGCCTGCTGGCGATGAGCCTGATTGATGTTGATCACCAATTGTTGCCGGATGTACTGGTTCTGCCC
TTGCTCTGGCTGGGGCTGATCCTCAATCAGTTTGGTTTGTTCGTCGCACCGGCGGATGCGCTCTGGGGCGCGGTCGCGGG
CTATCTGAGCCTATGGTCGGTGTTCTGGCTGTTCAAACTGATCACCGGCAAGGACGGCATGGGATACGGTGATTTCAAAC
TGCTGGCGCTGCTCGGCGCCTGGGGTGGCTGGCAGATTCTGCCGATGACGCTGTTGCTGTCCTCACTGGTGGGTGCGATA
TCGGGGCTGATACTTTTGCGTTTGCGTAACGCCCAGACGTCGGTACCCATGCCTTTTGGACCTTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.835	96.528	0.549
pilD	Vibrio campbellii strain DS40M4	51.579	98.958	0.51
pilD	Acinetobacter baumannii D1279779	51.685	92.708	0.479
pilD	Acinetobacter nosocomialis M2	51.685	92.708	0.479
pilD	Neisseria gonorrhoeae MS11	46.296	93.75	0.434