Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HKK58_RS23845 Genome accession   NZ_CP052856
Coordinates   5307013..5308221 (-) Length   402 a.a.
NCBI ID   WP_169368193.1    Uniprot ID   -
Organism   Pseudomonas sp. ADAK22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5302013..5313221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK58_RS23805 (HKK58_23805) - 5302908..5303081 (-) 174 WP_064450648.1 DUF3094 family protein -
  HKK58_RS23810 (HKK58_23810) - 5303171..5303800 (-) 630 WP_106578601.1 DUF1780 domain-containing protein -
  HKK58_RS23815 (HKK58_23815) - 5303901..5304368 (+) 468 WP_119736528.1 FAD/FMN-containing dehydrogenase -
  HKK58_RS23820 (HKK58_23820) - 5304365..5305054 (+) 690 WP_119736530.1 energy-coupling factor ABC transporter permease -
  HKK58_RS23825 (HKK58_23825) - 5305121..5305336 (+) 216 WP_003171680.1 hypothetical protein -
  HKK58_RS23830 (HKK58_23830) yacG 5305333..5305533 (-) 201 WP_106578604.1 DNA gyrase inhibitor YacG -
  HKK58_RS23835 (HKK58_23835) coaE 5305530..5306153 (-) 624 WP_106578605.1 dephospho-CoA kinase -
  HKK58_RS23840 (HKK58_23840) pilD 5306150..5307016 (-) 867 WP_119736534.1 A24 family peptidase Machinery gene
  HKK58_RS23845 (HKK58_23845) pilC 5307013..5308221 (-) 1209 WP_169368193.1 type II secretion system F family protein Machinery gene
  HKK58_RS23850 (HKK58_23850) - 5308425..5308838 (+) 414 WP_106578608.1 pilin -
  HKK58_RS23860 (HKK58_23860) - 5309129..5309434 (+) 306 WP_106578609.1 DUF6388 family protein -
  HKK58_RS23865 (HKK58_23865) nadC 5309478..5310326 (-) 849 WP_119736538.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HKK58_RS23870 (HKK58_23870) - 5310573..5312729 (+) 2157 WP_169368195.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43597.26 Da        Isoelectric Point: 9.7815

>NTDB_id=441775 HKK58_RS23845 WP_169368193.1 5307013..5308221(-) (pilC) [Pseudomonas sp. ADAK22]
MNDAATIYAWEGINRKGRRVCGQTAGQNLALIKAQLREQGICPGRIRKKTSRLPSFAPPIKPADIALFTRQLATLLKAGI
PLLQAFDIIGEGFDNRLMRELIKGLKQEIAAGNNLAAALKKQPRYFDDLYCHLIAAGEHAGALETLLERVAIHLEKSQQL
KARIKKAMTYPIAVIVIAGLVSTVLLIHVVPQFQNLFAGVDGTLPGFTLSVIALSEFLQHAWWMVALGLAATLIGLRHAY
RESAGLRHWLDLGLLNAPLAGTLVKKTAVARYARTLSTTFAAGVPLVQALDCVAGAVGNGLFKQAIEHMRHDVSTGMQLH
QSMANSRLFPSMAIQMTAIGEESGTLDRMLEKVANHYEADVQNLVDNLTSLMEPLIMVVLGGIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=441775 HKK58_RS23845 WP_169368193.1 5307013..5308221(-) (pilC) [Pseudomonas sp. ADAK22]
ATGAATGACGCTGCAACGATCTACGCCTGGGAAGGCATCAACCGCAAAGGACGCAGAGTCTGCGGGCAAACCGCAGGCCA
GAACCTGGCGCTGATCAAGGCACAACTGCGCGAGCAAGGGATTTGCCCGGGCCGCATCCGCAAGAAAACCTCACGCCTGC
CAAGCTTCGCCCCGCCGATAAAACCCGCCGATATTGCCCTGTTCACCCGCCAGCTGGCGACATTACTGAAGGCAGGCATA
CCGCTGTTGCAGGCGTTCGACATCATTGGCGAAGGCTTCGACAACCGCCTGATGCGCGAGCTCATCAAGGGCTTGAAACA
GGAAATCGCTGCCGGCAACAACCTGGCGGCCGCGCTGAAAAAACAACCGCGCTATTTCGATGACCTGTATTGCCACCTGA
TTGCCGCCGGCGAGCACGCCGGCGCCCTGGAAACGCTGCTGGAGCGCGTTGCCATCCATCTGGAAAAAAGCCAGCAGCTC
AAGGCGCGCATCAAGAAGGCCATGACCTACCCCATCGCCGTCATTGTGATTGCAGGCCTGGTCAGCACGGTCTTGCTGAT
CCACGTGGTGCCGCAGTTCCAGAACCTGTTTGCCGGCGTCGATGGCACACTGCCGGGCTTCACCCTGAGCGTCATAGCCT
TGTCCGAGTTCCTGCAGCATGCCTGGTGGATGGTGGCACTGGGCCTGGCCGCGACACTTATCGGGCTGCGCCACGCCTAC
CGCGAATCTGCCGGTCTTCGTCACTGGCTGGACCTTGGTTTGTTGAACGCGCCCCTGGCAGGCACACTGGTGAAAAAAAC
CGCGGTTGCCCGCTACGCCCGCACACTCTCAACGACCTTCGCTGCGGGCGTGCCGTTGGTGCAGGCGCTGGATTGCGTGG
CGGGAGCGGTGGGAAATGGGTTGTTCAAACAGGCGATCGAGCATATGCGTCACGATGTATCCACTGGCATGCAGTTGCAC
CAATCCATGGCCAACAGCCGCCTGTTTCCCAGTATGGCAATCCAGATGACGGCCATCGGGGAAGAATCGGGAACCCTGGA
CCGCATGCTGGAAAAAGTCGCCAATCACTACGAGGCCGATGTGCAAAACCTGGTCGATAACCTCACCAGCCTGATGGAGC
CCCTGATCATGGTGGTATTGGGCGGTATCGTTGGCGCACTGGTGATAGCCATGTACCTGCCAGTGTTCCAGCTGGGGTCG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.975

98.259

0.57
  pilC Acinetobacter baylyi ADP1

51.263

98.507

0.505
  pilC Acinetobacter baumannii D1279779

50.127

98.259

0.493
  pilC Legionella pneumophila strain ERS1305867

47.859

98.756

0.473
  pilG Neisseria gonorrhoeae MS11

41.514

95.274

0.396
  pilC Vibrio cholerae strain A1552

38.539

98.756

0.381
  pilG Neisseria meningitidis 44/76-A

40.052

95.025

0.381
  pilC Thermus thermophilus HB27

37.157

99.751

0.371
  pilC Vibrio campbellii strain DS40M4

37.056

98.01

0.363