Detailed information NTG0441774

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HKK58_RS23840
• Genome accession: NZ_CP052856
• Coordinates: 5306150..5307016 (-)
• Length: 288 a.a.
• NCBI ID: WP_119736534.1
• Uniprot ID: -
• Organism: Pseudomonas sp. ADAK22
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5301150..5312016

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HKK58_RS23800 (HKK58_23800)	-	5301549..5302847 (-)	1299	WP_106578600.1	NAD(P)/FAD-dependent oxidoreductase	-
HKK58_RS23805 (HKK58_23805)	-	5302908..5303081 (-)	174	WP_064450648.1	DUF3094 family protein	-
HKK58_RS23810 (HKK58_23810)	-	5303171..5303800 (-)	630	WP_106578601.1	DUF1780 domain-containing protein	-
HKK58_RS23815 (HKK58_23815)	-	5303901..5304368 (+)	468	WP_119736528.1	FAD/FMN-containing dehydrogenase	-
HKK58_RS23820 (HKK58_23820)	-	5304365..5305054 (+)	690	WP_119736530.1	energy-coupling factor ABC transporter permease	-
HKK58_RS23825 (HKK58_23825)	-	5305121..5305336 (+)	216	WP_003171680.1	hypothetical protein	-
HKK58_RS23830 (HKK58_23830)	yacG	5305333..5305533 (-)	201	WP_106578604.1	DNA gyrase inhibitor YacG	-
HKK58_RS23835 (HKK58_23835)	coaE	5305530..5306153 (-)	624	WP_106578605.1	dephospho-CoA kinase	-
HKK58_RS23840 (HKK58_23840)	pilD	5306150..5307016 (-)	867	WP_119736534.1	A24 family peptidase	Machinery gene
HKK58_RS23845 (HKK58_23845)	pilC	5307013..5308221 (-)	1209	WP_169368193.1	type II secretion system F family protein	Machinery gene
HKK58_RS23850 (HKK58_23850)	-	5308425..5308838 (+)	414	WP_106578608.1	pilin	-
HKK58_RS23860 (HKK58_23860)	-	5309129..5309434 (+)	306	WP_106578609.1	DUF6388 family protein	-
HKK58_RS23865 (HKK58_23865)	nadC	5309478..5310326 (-)	849	WP_119736538.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31632.79 Da
• Isoelectric Point: 8.2438

>NTDB_id=441774 HKK58_RS23840 WP_119736534.1 5306150..5307016(-) (pilD) [Pseudomonas sp. ADAK22]
MNPLLNEQPWLFVGLSLVLGLIVGSFLNVLVWRLPKMLEREWRAQAQEVLGLPADPAGPAYNLVRPHSCCPRCNHPIRAW
ENVPLLSYLLLKGRCAHCREPISSRYPFTELAGALVSAAVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDALVLP
LLWLGLILNSVGLLATLPDALWGAVIGYISLWTVFWLFKMITGKDGMGYGDFKLLALLGAWGGWQILPMTLLMSSLLGVL
AGLILLRLRKPQGSAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFK

Nucleotide

• Length: 867 bp

>NTDB_id=441774 HKK58_RS23840 WP_119736534.1 5306150..5307016(-) (pilD) [Pseudomonas sp. ADAK22]
TTGAACCCGTTGCTGAATGAACAACCGTGGCTTTTTGTCGGGCTGTCACTGGTGCTGGGCCTGATTGTCGGCAGTTTCCT
CAATGTGCTGGTGTGGCGCCTGCCGAAAATGCTCGAGCGCGAATGGCGCGCCCAGGCCCAGGAAGTGCTCGGCTTGCCTG
CTGACCCTGCGGGCCCGGCTTACAACCTAGTGCGCCCTCATTCCTGCTGCCCCCGGTGCAATCATCCGATTCGCGCGTGG
GAAAATGTTCCGCTGCTCAGTTACCTGCTGCTCAAGGGGCGCTGTGCCCATTGTCGTGAACCTATCAGTTCCCGCTACCC
GTTCACCGAACTTGCCGGCGCGCTGGTCTCGGCGGCGGTAGCCTGGCATTTCGGCTTCGGCTGGCAAGCCGGTGCAGTGA
TGCTGCTGAGCTGGGGGTTGCTGGCGATGAGCCTGATCGATGTGGATCATCAACTGCTGCCCGACGCGCTGGTGCTGCCG
CTGTTATGGCTGGGGCTGATTCTCAACAGCGTGGGCTTGCTGGCAACGCTGCCGGATGCGCTTTGGGGTGCGGTCATCGG
GTACATAAGCCTGTGGACGGTGTTCTGGCTGTTCAAGATGATCACCGGCAAGGACGGTATGGGCTATGGCGACTTCAAGT
TATTGGCCTTGCTCGGCGCCTGGGGTGGCTGGCAGATTCTGCCGATGACACTGCTGATGTCTTCGTTGCTCGGGGTGCTT
GCAGGGCTGATCCTGCTGCGCTTGCGCAAGCCCCAGGGGTCGGCACCGATGCCGTTTGGTCCGTGTCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCCGTCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.597	96.528	0.517
pilD	Vibrio campbellii strain DS40M4	48.944	98.611	0.483
pilD	Acinetobacter nosocomialis M2	48.54	95.139	0.462
pilD	Acinetobacter baumannii D1279779	48.54	95.139	0.462
pilD	Neisseria gonorrhoeae MS11	48.837	89.583	0.437