Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   IRJ22_RS01925 Genome accession   NZ_CP064092
Coordinates   374296..375213 (+) Length   305 a.a.
NCBI ID   WP_003180613.1    Uniprot ID   A0AA90ETR0
Organism   Bacillus licheniformis strain C5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 369296..380213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS01910 trpS 369907..370899 (-) 993 WP_011197767.1 tryptophan--tRNA ligase -
  IRJ22_RS01915 - 371635..373260 (+) 1626 WP_011197768.1 peptide ABC transporter substrate-binding protein -
  IRJ22_RS01920 - 373356..374291 (+) 936 WP_003180611.1 ABC transporter permease -
  IRJ22_RS01925 amiD 374296..375213 (+) 918 WP_003180613.1 ABC transporter permease Regulator
  IRJ22_RS01930 - 375227..376294 (+) 1068 WP_003180615.1 ABC transporter ATP-binding protein -
  IRJ22_RS01935 - 376296..377219 (+) 924 WP_011197769.1 ABC transporter ATP-binding protein -
  IRJ22_RS01940 - 377450..378028 (+) 579 WP_003180619.1 GNAT family N-acetyltransferase -
  IRJ22_RS01945 spxA 378206..378601 (+) 396 WP_009328833.1 transcriptional regulator SpxA -
  IRJ22_RS01950 - 378824..379486 (-) 663 WP_009328832.1 TerC family protein -
  IRJ22_RS01955 - 379662..379790 (+) 129 Protein_391 hypothetical protein -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33952.29 Da        Isoelectric Point: 8.8249

>NTDB_id=441535 IRJ22_RS01925 WP_003180613.1 374296..375213(+) (amiD) [Bacillus licheniformis strain C5]
MQQIPKDMFEPAAVDHSEAEKISKKNLSFWTDVFLRFKENKLALFGLVVLILIALMAIFAPVFSSFQYEETDLTNANQPP
SGEHWFGTDDLGRDVFVRTWVGARISLTIGLAAALIDVLIGVIWGAISGIRGGRTDEIMMRIADILWAIPSLLMTILLLV
VMGKGLITMIVAMVITGWINMARIVRGQVLQLKNQEFVLASRTLGAKNSRIIRKHLLPNIMSPILVTMTLTVPTAIFYEA
FLSYLGLGVPQPLASWGTMATDGVQGLEYYPWRLFFPATFICLTMFAFNVIGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=441535 IRJ22_RS01925 WP_003180613.1 374296..375213(+) (amiD) [Bacillus licheniformis strain C5]
ATGCAGCAAATACCAAAAGACATGTTTGAACCTGCAGCTGTTGACCATAGCGAAGCCGAAAAGATCTCAAAGAAAAACCT
TTCTTTTTGGACAGACGTATTCTTGAGATTTAAAGAAAACAAGCTGGCGCTGTTTGGACTGGTGGTTCTGATCCTGATCG
CTCTGATGGCTATCTTCGCGCCGGTGTTCTCAAGCTTTCAATATGAAGAAACAGATTTAACGAATGCGAACCAGCCGCCA
AGCGGTGAGCACTGGTTTGGAACAGATGACCTTGGAAGGGACGTATTCGTCCGTACATGGGTCGGCGCCCGCATCTCGCT
GACAATCGGACTCGCTGCTGCGCTGATCGACGTTTTGATCGGTGTGATATGGGGTGCGATTTCCGGCATCAGAGGCGGAC
GTACGGATGAAATTATGATGAGAATAGCAGATATTTTATGGGCGATTCCTTCTTTATTAATGACCATCCTGCTGCTCGTT
GTTATGGGAAAAGGCCTGATCACGATGATCGTGGCGATGGTTATTACGGGCTGGATCAACATGGCGAGAATCGTCCGGGG
CCAAGTACTCCAGCTTAAAAATCAGGAGTTCGTACTCGCCTCAAGAACATTGGGAGCGAAAAACTCGCGCATTATCAGAA
AGCACCTGCTGCCCAACATCATGAGCCCGATCTTGGTCACCATGACATTAACCGTTCCTACGGCTATTTTCTATGAGGCG
TTTTTAAGCTACCTCGGCCTCGGGGTTCCGCAGCCGCTTGCAAGCTGGGGAACGATGGCAACAGACGGTGTTCAGGGATT
GGAATACTACCCTTGGCGCCTGTTCTTCCCGGCTACTTTTATCTGTCTGACCATGTTTGCATTCAACGTTATCGGCGACG
GACTGCGCGACGCTTTAGATCCGAAGCTGCGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA90ETR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

35.922

100

0.364
  amiD Streptococcus thermophilus LMG 18311

35.599

100

0.361
  amiD Streptococcus thermophilus LMD-9

35.599

100

0.361